Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • candidate regulatory elements
  • 1357target gene predictions
  • 977histone modifications
  • 913accessible chromatin
  • 904chromatin state
  • 817binding sites
  • 689gene expression
  • 189eQTL
  • 172differential activity
  • 141variant allelic effects
  • 84Fine-mapped variants
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 1753February, 2021
  • 1679September, 2022
  • 384May, 2021
  • 376February, 2024
  • 333November, 2021
  • 289June, 2020
  • 286September, 2023
  • 152May, 2020
  • 128August, 2021
  • 128March, 2020
  • 106January, 2022
  • 101October, 2022
  • 83January, 2020
  • 70March, 2023
  • 64February, 2020
  • 56January, 2021
  • 49May, 2022
  • 44November, 2022
  • 38March, 2025
  • 32February, 2023
  • 31August, 2017
  • 30March, 2024
  • 19April, 2020
  • 13November, 2019
  • 9August, 2018
  • 9October, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 2May, 2024
  • 1April, 2019
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 4375bed bed3+
  • 3576tsv
  • 869bed bed9
  • 546bigWig
  • 108txt
  • bigBed bed9
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 8871Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 1848ChIP-Atlas
  • 1666EpiMap
  • 641DGA
  • 533AMP
  • 421T1D
  • 405T2DKP
  • 281KPMP
  • 219BLUEPRINT
  • 174 T2DKP
  • 1744DN
  • 151GTEx
  • 128ENCODE
  • 111T2D
  • 101eQTLCatalogue
  • 100CMDGA
  • 67HPAP
  • 43STARNET
  • 12ROADMAP
Biosample type
  • 4355tissue
  • 2147primary cell
  • 2025cell line
  • 386in vitro differentiated cells
  • 4stem cell
Organ
  • 2852vasculature
  • 2812bodily fluid
  • 2805blood
  • 2801blood vessel
  • 2650vein
  • 847epithelium
  • 491kidney
  • 390connective tissue
  • 350brain
  • 251pancreas
  • 231musculature of body
  • 180lung
  • 176intestine
  • 175heart
  • 158embryo
  • 146limb
  • 137liver
  • 129skin of body
  • 105large intestine
  • 91eye
  • 87extraembryonic component
  • 79adipose tissue
  • 74uterus
  • 68stomach
  • 67artery
  • 64bone element
  • 59mammary gland
  • 51prostate gland
  • 47small intestine
  • 45adrenal gland
  • 44placenta
  • 41lymph node
  • 36penis
  • 33gonad
  • 33ureter
  • 29thymus
  • 28esophagus
  • 27spinal cord
  • 19spleen
  • 18nerve
  • 17lymphatic vessel
  • 17testis
  • 15lymphoid tissue
  • 15ovary
  • 15thyroid gland
  • 14skeleton
  • 13pituitary gland
  • 12bronchus
  • 11bone marrow
  • 11mouth
  • 8breast
  • 7urinary bladder
  • 6tongue
  • 6vagina
  • 5trachea
  • 3nose
  • 1pericardium
Project
  • 8208AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 5253hg19
  • 1840GRCh38
  • 4hg18
annotation_type!
  • candidate regulatory elements
files.file_type!
  • bigBed bed9
BIOSAMPLE
TYPE

8919 results

search-icontable-tab-icon
Clear Filters
pQTL
target gene predictions
histone modifications
accessible chromatin
chromatin state
binding sites
gene expression
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
sQTL
hQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
heart201519132
kidney14210141711
stomach21131911
islet of Langerhans1162211131222
primary cell
monocyte286181154121
CD8-positive, alpha-beta T cell530413
endothelial cell711529122
hepatocyte34811132
macrophage31229311
cell line
HeLa-S35531
H1-hESC3911128
A5491911182
K562231172
EndoC_BH11181831
in vitro differentiated cells
neural progenitor cell5151047
hematopoietic multipotent progenitor cell10111011
adipocyte614611
cardiomyocytes11
embryonic stem cell1161
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego