Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • candidate regulatory elements
  • 1357target gene predictions
  • 977histone modifications
  • 944chromatin state
  • 913accessible chromatin
  • 817binding sites
  • 144eQTL
  • 141variant allelic effects
  • 43gene expression
  • 13caQTL
  • 9differential activity
  • 7sQTL
  • 5hQTL
  • 3meQTL
  • 3other
  • 3pQTL
  • 2Fine-mapped variants
  • 2variant to gene
Date released
  • 1679September, 2022
  • 1575February, 2021
  • 333November, 2021
  • 309February, 2024
  • 301May, 2021
  • 289June, 2020
  • 155May, 2020
  • 106January, 2022
  • 101October, 2022
  • 79August, 2021
  • 72January, 2020
  • 56January, 2021
  • 49March, 2020
  • 49May, 2022
  • 44November, 2022
  • 35August, 2017
  • 31February, 2023
  • 19April, 2020
  • 17February, 2020
  • 14November, 2019
  • 14October, 2019
  • 13March, 2023
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 5September, 2023
  • 3September, 2018
  • 2January, 2025
  • 2November, 2020
  • 1August, 2020
  • 1August, 2022
  • 1February, 2025
  • 1June, 2021
Available data
  • 4375bed bed3+
  • tsv
  • 869bed bed9
  • 546bigWig
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 5336Homo sapiens
Collection Tags
  • 1848ChIP-Atlas
  • 1666EpiMap
  • 459DGA
  • 424AMP
  • 406T2DKP
  • 329T1D
  • 181BLUEPRINT
  • 1744DN
  • 122 T2DKP
  • 111T2D
  • 110ENCODE
  • 101eQTLCatalogue
  • 97CMDGA
  • 12HPAP
  • 12ROADMAP
Biosample type
  • 2003cell line
  • 1554primary cell
  • 1504tissue
  • 316in vitro differentiated cells
  • 4stem cell
Organ
  • 525epithelium
  • 317connective tissue
  • 289brain
  • 242kidney
  • 215musculature of body
  • 179lung
  • 177pancreas
  • 173intestine
  • 170bodily fluid
  • 163blood
  • 156heart
  • 152vasculature
  • 148embryo
  • 133limb
  • 127skin of body
  • 118blood vessel
  • 105liver
  • 103large intestine
  • 89eye
  • 87extraembryonic component
  • 72uterus
  • 66stomach
  • 60bone element
  • 59mammary gland
  • 50prostate gland
  • 49artery
  • 48adipose tissue
  • 47small intestine
  • 44adrenal gland
  • 44placenta
  • 41lymph node
  • 36penis
  • 33ureter
  • 31gonad
  • 29thymus
  • 26esophagus
  • 22spinal cord
  • 18spleen
  • 16testis
  • 16vein
  • 14lymphoid tissue
  • 14ovary
  • 14skeleton
  • 14thyroid gland
  • 13nerve
  • 12bronchus
  • 12lymphatic vessel
  • 12pituitary gland
  • 11bone marrow
  • 10mouth
  • 7breast
  • 6urinary bladder
  • 5tongue
  • 5trachea
  • 5vagina
  • 3nose
  • 1pericardium
Project
  • 4955AMP
  • 333ENCODE
  • 60T1D
  • 19LungMap
  • 11community
  • 5ITG
Genome assembly (visualization)
  • 5197hg19
  • 1765GRCh38
  • 4hg18
annotation_type!
  • candidate regulatory elements
files.file_type!
  • tsv
BIOSAMPLE
TYPE

5383 results

search-icontable-tab-icon
Clear Filters
target gene predictions
histone modifications
chromatin state
accessible chromatin
binding sites
eQTL
variant allelic effects
gene expression
caQTL
differential activity
sQTL
hQTL
meQTL
other
pQTL
Fine-mapped variants
variant to gene
cell line
HeLa-S35531
H1-hESC391112
A5491911812
K562231712
breast cancer cell119
primary cell
monocyte2861814121
CD8-positive, alpha-beta T cell53014
endothelial cell711521212
fibroblast416126
common myeloid progenitor, CD34-positive1413
tissue
heart20121512
kidney1421610111
stomach2111931
brain163182121
liver10294171
in vitro differentiated cells
neural progenitor cell515410
hematopoietic multipotent progenitor cell1011011
adipocyte61641
embryonic stem cell11561
T-cell acute lymphoblastic leukemia53
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego