Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
255
gene expression
candidate regulatory elements
230
accessible chromatin
206
target gene predictions
130
chromatin state
92
differential activity
52
binding sites
41
variant allelic effects
32
histone modifications
7
eQTL
2
caQTL
Date released
255
September, 2022
161
February, 2021
155
September, 2023
131
November, 2021
76
February, 2024
38
March, 2023
38
May, 2021
32
June, 2020
23
August, 2021
20
January, 2021
15
May, 2020
15
November, 2022
14
January, 2020
12
February, 2023
10
October, 2022
9
February, 2020
8
April, 2020
8
March, 2020
6
August, 2018
5
October, 2019
4
August, 2017
4
January, 2022
4
March, 2024
2
May, 2022
1
July, 2020
1
November, 2019
Available data
563
bed bed3+
326
tsv
187
bigWig
126
bed bed9
78
txt
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
1047
Homo sapiens
Biosample type
748
primary cell
171
tissue
104
cell line
24
in vitro differentiated cells
Organ
849
epithelium
493
kidney
380
connective tissue
355
brain
253
pancreas
229
musculature of body
216
vasculature
185
heart
180
lung
176
intestine
171
bodily fluid
165
blood vessel
164
blood
158
embryo
150
limb
133
liver
129
skin of body
105
large intestine
91
eye
87
extraembryonic component
74
uterus
70
adipose tissue
68
stomach
65
artery
64
bone element
59
mammary gland
51
prostate gland
47
small intestine
45
adrenal gland
44
placenta
41
lymph node
36
penis
33
gonad
33
ureter
29
thymus
28
esophagus
27
spinal cord
19
nerve
19
spleen
17
lymphatic vessel
17
testis
17
vein
15
lymphoid tissue
15
ovary
15
thyroid gland
14
skeleton
13
pituitary gland
12
bronchus
11
bone marrow
11
mouth
8
breast
7
urinary bladder
6
tongue
6
vagina
5
trachea
3
nose
1
pericardium
Project
731
AMP
155
KPMP
131
ENCODE
20
T1D
8
LungMap
2
community
Genome assembly (visualization)
692
hg19
326
GRCh38
annotation_type!
candidate regulatory elements
BIOSAMPLE
TYPE
1047 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
chromatin state
differential activity
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
8
3
1
1
2
4
epithelial cell of proximal tubule
16
1
1
1
1
1
glomerular endothelial cell
14
2
1
1
1
pancreatic ductal cell
3
6
3
3
1
1
2
+ See 147 more…
tissue
lung
1
17
16
1
left lung
13
13
right lung
1
11
11
pigmented layer of retina
20
upper lobe of left lung
1
3
3
1
1
+ See 34 more…
cell line
A549
1
19
18
2
1
EndoC_BH1
8
8
1
3
1
IMR-90
1
2
1
2
1
PC-9
1
2
1
1
1
keratinocyte
3
1
+ See 12 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
pancreatic ductal cell
3
+ See 4 more…
See all biosamples
Download