Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 36target gene predictions
  • candidate regulatory elements
  • 15chromatin state
  • 12binding sites
  • 7accessible chromatin
  • 5histone modifications
  • 1variant allelic effects
Date released
  • 28September, 2022
  • 17July, 2026
  • 14February, 2021
  • 6November, 2021
  • 4June, 2020
  • 3October, 2022
  • 2May, 2021
  • 1August, 2017
  • 1February, 2024
Available data
  • 62bed bed3+
  • 14bed bed9
  • 3bigWig
Organism
  • 76Homo sapiens
Collection Tags
  • 28EpiMap
  • 18ChIP-Atlas
  • 17ENCODE-rE2G
  • 6AMP
  • 6T2DKP
  • 3DGA
  • 3ENCODE
Biosample type
  • 37primary cell
  • 34cell line
  • 3in vitro differentiated cells
  • 2tissue
Organ
  • 3322blood
  • 2852vasculature
  • 2822blood vessel
  • 2806bodily fluid
  • 2653vein
  • 852epithelium
  • 792brain
  • 597kidney
  • 438connective tissue
  • 392heart
  • 309lung
  • 295pancreas
  • 245intestine
  • 240musculature of body
  • 221skin of body
  • 205liver
  • 158embryo
  • 157large intestine
  • 150limb
  • 143eye
  • 123adipose tissue
  • 115extraembryonic component
  • 111muscle organ
  • 89stomach
  • 84uterus
  • 81bone element
  • 78artery
  • 76mammary gland
  • 74adrenal gland
  • 73thymus
  • 68placenta
  • 60__MARKER__
  • 60prostate gland
  • 60small intestine
  • 48spleen
  • 47gonad
  • 42ureter
  • 41lymph node
  • 39thyroid gland
  • 36penis
  • 33spinal cord
  • 31esophagus
  • 24ovary
  • 22testis
  • 20skeleton
  • 19nerve
  • 17lymphatic vessel
  • 15lymphoid tissue
  • 13mouth
  • 13pituitary gland
  • 12bronchus
  • 11bone marrow
  • 10breast
  • 10urinary bladder
  • 8tongue
  • 8vagina
  • 5trachea
  • 3nose
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 70AMP
  • 6ENCODE
Genome assembly (visualization)
  • 59hg19
  • 37GRCh38
annotation_type!
  • candidate regulatory elements
BIOSAMPLE
TYPE

76 results

search-icontable-tab-icon
Clear Filters
target gene predictions
chromatin state
binding sites
accessible chromatin
histone modifications
variant allelic effects
primary cell
mammary epithelial cell4141
mammary gland epithelial cell43111
fibroblast of mammary gland21211
luminal epithelial cell of mammary gland312
myoepithelial cell of mammary gland22
cell line
MCF-7135312
T47D52
MCF 10A3
in vitro differentiated cells
mammary gland epithelial cell111
tissue
mammary gland11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego