Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • candidate regulatory elements
  • 44target gene predictions
  • 35chromatin state
  • 18binding sites
  • 13accessible chromatin
  • 13histone modifications
  • 3eQTL
  • 2gene expression
  • 1variant allelic effects
Date released
  • 68September, 2022
  • 27February, 2021
  • 10November, 2021
  • 8June, 2020
  • 5May, 2021
  • 4October, 2022
  • 3January, 2022
  • 2March, 2024
  • 1August, 2017
  • 1February, 2024
Available data
  • 93bed bed3+
  • 34bed bed9
  • 5bigWig
  • 2tsv
Organism
  • 129Homo sapiens
Collection Tags
  • 68EpiMap
  • 35ChIP-Atlas
  • 10AMP
  • 10T2DKP
  • 6DGA
  • 4ENCODE
  • 3T1D
  • 3T2D
  • 3eQTLCatalogue
  • 2GTEx
Biosample type
  • 62primary cell
  • 43cell line
  • 15tissue
  • 9in vitro differentiated cells
Organ
  • 2860vasculature
  • 2812bodily fluid
  • 2809blood vessel
  • 2805blood
  • 2652vein
  • 849epithelium
  • 493kidney
  • 392connective tissue
  • 356brain
  • 253pancreas
  • 234musculature of body
  • 185heart
  • 180lung
  • 176intestine
  • 158embryo
  • 150limb
  • 138liver
  • 129skin of body
  • 105large intestine
  • 91eye
  • 87extraembryonic component
  • 80adipose tissue
  • 74uterus
  • 69artery
  • 68stomach
  • 64bone element
  • 59mammary gland
  • 51prostate gland
  • 47small intestine
  • 45adrenal gland
  • 44placenta
  • 41lymph node
  • 36penis
  • 33gonad
  • 33ureter
  • 29thymus
  • 28esophagus
  • 27spinal cord
  • 19nerve
  • 19spleen
  • 17lymphatic vessel
  • 17testis
  • 15lymphoid tissue
  • 15ovary
  • 15thyroid gland
  • 14skeleton
  • 13pituitary gland
  • 12bronchus
  • 11bone marrow
  • 11mouth
  • 8breast
  • 7urinary bladder
  • 6tongue
  • 6vagina
  • 5trachea
  • 3nose
  • 1pericardium
Project
  • 119AMP
  • 10ENCODE
Genome assembly (visualization)
  • 124hg19
  • 47GRCh38
annotation_type!
  • candidate regulatory elements
BIOSAMPLE
TYPE

129 results

search-icontable-tab-icon
Clear Filters
target gene predictions
chromatin state
binding sites
accessible chromatin
histone modifications
eQTL
gene expression
variant allelic effects
primary cell
keratinocyte531221
foreskin fibroblast21412
fibroblast of dermis431
foreskin keratinocyte44
skin fibroblast322
cell line
GM2324811111
keratinocyte31
RPMI7951111
SK-MEL-5111
iPS DF 19.1121
tissue
skin of body113
lower leg skin22
skin of forearm11
skin of prepuce of penis11
skin - not sun exposed (suprapubic)1
in vitro differentiated cells
foreskin keratinocyte111
iPS DF 4.7 Cell Line111
dermis microvascular lymphatic vessel endothelial cell11
skin fibroblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego