Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
260
gene expression
237
accessible chromatin
155
target gene predictions
145
candidate regulatory elements
93
differential activity
chromatin state
57
binding sites
44
histone modifications
42
variant allelic effects
11
eQTL
3
Fine-mapped variants
3
caQTL
Date released
252
February, 2021
159
September, 2022
155
September, 2023
129
November, 2021
77
February, 2024
38
March, 2023
36
May, 2021
34
June, 2020
30
August, 2021
22
January, 2021
17
May, 2020
15
November, 2022
14
January, 2020
12
February, 2023
12
March, 2020
11
February, 2020
8
October, 2022
7
April, 2020
6
August, 2018
5
October, 2019
4
May, 2022
2
March, 2024
2
November, 2019
1
January, 2022
1
July, 2020
1
September, 2018
Available data
678
bed bed3+
336
tsv
191
bigWig
78
txt
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
Organism
1050
Homo sapiens
Biosample type
792
primary cell
124
tissue
109
cell line
25
in vitro differentiated cells
Organ
896
epithelium
575
kidney
412
connective tissue
394
brain
301
musculature of body
260
pancreas
240
lung
233
vasculature
230
intestine
204
heart
194
limb
191
bodily fluid
187
embryo
182
blood
176
blood vessel
169
skin of body
139
liver
138
large intestine
113
extraembryonic component
100
eye
95
stomach
79
adipose tissue
79
uterus
74
bone element
72
mammary gland
67
artery
65
prostate gland
64
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
18
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
11
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
735
AMP
155
KPMP
129
ENCODE
22
T1D
7
LungMap
2
community
Genome assembly (visualization)
689
hg19
207
GRCh38
2
hg18
annotation_type!
chromatin state
BIOSAMPLE
TYPE
1050 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
binding sites
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
caQTL
primary cell
endothelial cell
9
15
7
2
1
2
1
2
hepatocyte
13
8
3
1
1
4
2
epithelial cell of proximal tubule
16
1
1
2
1
1
glomerular endothelial cell
14
2
1
2
1
pancreatic ductal cell
3
6
3
3
1
2
1
+ See 152 more…
tissue
liver
1
4
10
13
1
1
2
7
1
pigmented layer of retina
20
breast epithelium
1
3
5
esophagus squamous epithelium
1
2
6
right lobe of liver
1
1
2
1
3
+ See 29 more…
cell line
EndoC_BH1
8
8
1
3
1
HepG2
2
3
2
3
5
MG63
1
1
2
1
1
HuH-7
1
1
1
1
1
OCI-LY1
1
2
1
1
+ See 21 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
foreskin keratinocyte
1
1
1
hepatocyte
1
2
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download