Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1709candidate regulatory elements
  • 1357target gene predictions
  • 977histone modifications
  • chromatin state
  • 913accessible chromatin
  • 817binding sites
  • 678gene expression
  • 189eQTL
  • 172differential activity
  • 141variant allelic effects
  • 84Fine-mapped variants
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2579February, 2021
  • 1678September, 2022
  • 384May, 2021
  • 373February, 2024
  • 333November, 2021
  • 289June, 2020
  • 286September, 2023
  • 152May, 2020
  • 128August, 2021
  • 128March, 2020
  • 106January, 2022
  • 101October, 2022
  • 83January, 2020
  • 70March, 2023
  • 64February, 2020
  • 56January, 2021
  • 44November, 2022
  • 40May, 2024
  • 38March, 2025
  • 32February, 2023
  • 30March, 2024
  • 19April, 2020
  • 15May, 2022
  • 13November, 2019
  • 9August, 2018
  • 9October, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 6044bed bed3+
  • 3565tsv
  • 544bigWig
  • 108txt
  • 26csv
  • 16bigBed narrowPeak
  • 3bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 9665Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 1848ChIP-Atlas
  • 1666EpiMap
  • 966ENCODE
  • 636DGA
  • 522AMP
  • 421T1D
  • 404T2DKP
  • 281KPMP
  • 185BLUEPRINT
  • 174 T2DKP
  • 1744DN
  • 151GTEx
  • 111T2D
  • 101eQTLCatalogue
  • 100CMDGA
  • 67HPAP
  • 43STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 4812tissue
  • 2320primary cell
  • 2161cell line
  • 415in vitro differentiated cells
  • 3stem cell
Organ
  • 2880vasculature
  • 2832bodily fluid
  • 2823blood
  • 2820blood vessel
  • 2653vein
  • 905epithelium
  • 575kidney
  • 432connective tissue
  • 395brain
  • 306musculature of body
  • 260pancreas
  • 240lung
  • 230intestine
  • 206heart
  • 194limb
  • 187embryo
  • 169skin of body
  • 146liver
  • 138large intestine
  • 113extraembryonic component
  • 100eye
  • 95stomach
  • 89adipose tissue
  • 79uterus
  • 74bone element
  • 72mammary gland
  • 71artery
  • 65prostate gland
  • 64small intestine
  • 59adrenal gland
  • 57placenta
  • 54lymph node
  • 54penis
  • 51ureter
  • 42gonad
  • 38esophagus
  • 38thymus
  • 35spinal cord
  • 28spleen
  • 22lymphatic vessel
  • 22testis
  • 21nerve
  • 19lymphoid tissue
  • 19ovary
  • 19thyroid gland
  • 15mouth
  • 15skeleton
  • 14bronchus
  • 13pituitary gland
  • 11bone marrow
  • 11breast
  • 8tongue
  • 8urinary bladder
  • 8vagina
  • 5trachea
  • 3nose
  • 1pericardium
Project
  • 9002AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 6058hg19
  • 1040GRCh38
  • 4hg18
annotation_type!
  • chromatin state
biosample_term_name!
  • cardiomyocytes
BIOSAMPLE
TYPE

9713 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
sQTL
hQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
heart372015132
stomach40211311
kidney29142101711
brain2916321121
primary cell
monocyte286181154121
CD8-positive, alpha-beta T cell753043
endothelial cell3711529122
common myeloid progenitor, CD34-positive2714
B cell171062
cell line
HeLa-S35551
H1-hESC1391128
A5492119112
K562723112
EndoC_BH11181831
in vitro differentiated cells
neural progenitor cell5515107
hematopoietic multipotent progenitor cell19101111
adipocyte461411
embryonic stem cell1161
extended pluripotent stem (EPS) cells9
stem cell
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego