Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
74
accessible chromatin
58
target gene predictions
53
gene expression
48
candidate regulatory elements
35
differential activity
chromatin state
18
eQTL
11
variant allelic effects
10
binding sites
8
histone modifications
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
51
September, 2022
48
February, 2021
47
March, 2023
34
May, 2021
25
February, 2024
23
November, 2021
20
January, 2021
10
March, 2020
9
June, 2020
8
August, 2021
7
August, 2018
7
January, 2022
6
May, 2020
6
October, 2019
5
September, 2023
4
January, 2020
3
May, 2024
2
February, 2020
2
March, 2024
2
November, 2019
1
April, 2020
1
February, 2023
1
January, 2018
1
June, 2021
1
October, 2022
Available data
209
bed bed3+
83
tsv
61
bigWig
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
Organism
324
Homo sapiens
Biosample type
148
primary cell
132
tissue
39
cell line
5
in vitro differentiated cells
Organ
906
epithelium
575
kidney
420
connective tissue
394
brain
301
musculature of body
260
pancreas
240
lung
236
vasculature
230
intestine
206
heart
194
limb
191
bodily fluid
187
embryo
182
blood
176
blood vessel
169
skin of body
141
liver
138
large intestine
113
extraembryonic component
100
eye
95
stomach
79
adipose tissue
79
uterus
74
bone element
72
mammary gland
67
artery
65
prostate gland
64
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
lymphatic vessel
22
testis
21
nerve
19
lymphoid tissue
19
ovary
19
thyroid gland
18
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
11
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
273
AMP
23
ENCODE
20
T1D
5
KPMP
2
community
1
LungMap
Genome assembly (visualization)
223
hg19
59
GRCh38
annotation_type!
chromatin state
BIOSAMPLE
TYPE
324 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
gene expression
candidate regulatory elements
differential activity
eQTL
variant allelic effects
binding sites
histone modifications
Fine-mapped variants
sQTL
variant to gene
primary cell
pancreatic ductal cell
6
3
3
3
1
1
2
pancreatic beta cell
8
3
3
3
1
pancreatic alpha cell
7
3
3
3
1
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
4
3
3
1
+ See 19 more…
tissue
islet of Langerhans
6
1
11
13
1
2
1
2
2
2
body of pancreas
5
2
8
1
1
3
pancreas
5
5
5
1
1
1
1
ovary
1
6
1
8
1
testis
1
3
1
7
1
1
1
+ See 8 more…
cell line
EndoC_BH1
8
1
8
3
1
NT2-D1 cell
1
1
1
2
Panc1
2
2
8988T
1
1
HPDE6-E6E7
1
1
+ See 4 more…
in vitro differentiated cells
pancreatic ductal cell
3
dermis microvascular lymphatic vessel endothelial cell
1
1
See all biosamples
Download