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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
69
candidate regulatory elements
44
target gene predictions
10
accessible chromatin
6
binding sites
5
histone modifications
3
chromatin state
2
eQTL
2
gene expression
Date released
65
September, 2022
46
February, 2021
7
June, 2020
6
November, 2021
5
May, 2021
3
August, 2017
3
February, 2024
2
January, 2022
2
March, 2024
1
March, 2020
1
October, 2022
Available data
137
bed bed3+
bed bed9
3
bigWig
2
tsv
Organism
141
Homo sapiens
Biosample type
105
tissue
30
cell line
6
primary cell
Organ
817
epithelium
519
kidney
411
connective tissue
400
brain
303
musculature of body
241
lung
234
intestine
231
pancreas
219
vasculature
211
heart
194
limb
193
bodily fluid
188
embryo
184
blood
170
skin of body
165
blood vessel
141
large intestine
138
liver
113
extraembryonic component
100
eye
96
stomach
79
uterus
77
adipose tissue
75
bone element
73
mammary gland
65
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
20
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
135
AMP
6
ENCODE
Genome assembly (visualization)
137
hg19
10
GRCh38
annotation_type!
differential activity
assembly!
hg18
files.file_type!
bed bed9
BIOSAMPLE
TYPE
141 results
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candidate regulatory elements
target gene predictions
accessible chromatin
binding sites
histone modifications
chromatin state
eQTL
gene expression
tissue
large intestine
27
14
1
1
sigmoid colon
10
7
1
transverse colon
8
5
1
1
colonic mucosa
4
2
1
1
mucosa of rectum
4
2
1
+ See 7 more…
cell line
HT-29
2
2
1
1
1
SW480
2
1
1
1
1
HCT116
2
3
HCT-116 cell
1
1
2
RKO
1
1
1
1
+ See 3 more…
primary cell
colon epithelial cell
3
3
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