Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1709candidate regulatory elements
  • 1357target gene predictions
  • 977histone modifications
  • 913accessible chromatin
  • 904chromatin state
  • 817binding sites
  • 689gene expression
  • 189eQTL
  • differential activity
  • 141variant allelic effects
  • 84Fine-mapped variants
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2590February, 2021
  • 2511September, 2022
  • 384May, 2021
  • 373February, 2024
  • 333November, 2021
  • 289June, 2020
  • 176September, 2023
  • 152May, 2020
  • 128August, 2021
  • 128March, 2020
  • 106January, 2022
  • 101October, 2022
  • 83January, 2020
  • 64February, 2020
  • 56January, 2021
  • 49May, 2022
  • 44November, 2022
  • 40May, 2024
  • 33March, 2025
  • 31August, 2017
  • 31February, 2023
  • 30March, 2024
  • 19April, 2020
  • 19March, 2023
  • 13November, 2019
  • 9August, 2018
  • 9October, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1April, 2019
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 6084bed bed3+
  • 3413tsv
  • 869bed bed9
  • 546bigWig
  • 108txt
  • bigBed bed9
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 10408Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1848ChIP-Atlas
  • 966ENCODE
  • 641DGA
  • 533AMP
  • 421T1D
  • 405T2DKP
  • 219BLUEPRINT
  • 174 T2DKP
  • 1744DN
  • 171KPMP
  • 151GTEx
  • 111T2D
  • 101eQTLCatalogue
  • 90CMDGA
  • 33STARNET
  • 26FNIH_projects-heart
  • 25HPAP
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 5282tissue
  • 2361primary cell
  • 2342cell line
  • 465in vitro differentiated cells
  • 4stem cell
Organ
  • 2886vasculature
  • 2859bodily fluid
  • 2848blood
  • 2827blood vessel
  • 2656vein
  • 864epithelium
  • 594kidney
  • 462connective tissue
  • 461brain
  • 375musculature of body
  • 311lung
  • 289intestine
  • 247heart
  • 242pancreas
  • 240limb
  • 215embryo
  • 204skin of body
  • 174large intestine
  • 157liver
  • 146extraembryonic component
  • 119stomach
  • 109eye
  • 94adipose tissue
  • 89bone element
  • 87mammary gland
  • 84small intestine
  • 83uterus
  • 78prostate gland
  • 75artery
  • 73adrenal gland
  • 73placenta
  • 64penis
  • 64ureter
  • 62lymph node
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 24lymphoid tissue
  • 24nerve
  • 23ovary
  • 23thyroid gland
  • 22lymphatic vessel
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 9864AMP
  • 333ENCODE
  • 171KPMP
  • 60T1D
  • 19LungMap
  • 5ITG
  • 4community
Genome assembly (visualization)
  • 6962hg19
  • 1878GRCh38
  • 4hg18
annotation_type!
  • differential activity
files.file_type!
  • bigBed bed9
BIOSAMPLE
TYPE

10456 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
chromatin state
binding sites
gene expression
eQTL
variant allelic effects
Fine-mapped variants
caQTL
sQTL
hQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
heart37201519132
stomach4021131911
kidney2914210141711
brain291632161121
primary cell
monocyte286181154121
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell7530413
B cell1710682
endothelial cell3711529122
cell line
HeLa-S355531
A549211911182
H1-hESC13911128
K5627231172
MCF-7962153
in vitro differentiated cells
neural progenitor cell55151047
hematopoietic multipotent progenitor cell1910111011
adipocyte4614611
cardiomyocytes11
mesenchymal stem cell331121
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego