Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
target gene predictions
872
histone modifications
811
binding sites
gene expression
521
accessible chromatin
167
differential activity
140
variant allelic effects
75
chromatin state
45
eQTL
6
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
2
Fine-mapped variants
representative DNase hypersensitivity sites
Date released
2399
February, 2021
838
September, 2022
289
June, 2020
126
May, 2020
110
September, 2023
99
October, 2022
97
February, 2024
63
May, 2021
57
March, 2023
46
August, 2021
44
November, 2022
43
May, 2022
35
August, 2017
28
January, 2021
26
February, 2023
19
April, 2020
3
January, 2020
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
February, 2020
1
June, 2021
1
March, 2020
1
November, 2019
1
October, 2019
Available data
4051
bed bed3+
162
tsv
161
bigWig
34
bed bed9+
13
bigBed narrowPeak
9
bigBed bed9
5
bed bed9
4
bam
3
bed gappedPeak
3
xls
Organism
4286
Homo sapiens
Biosample type
1735
cell line
1290
tissue
1040
primary cell
265
in vitro differentiated cells
1
stem cell
Organ
398
epithelium
270
kidney
229
connective tissue
219
brain
191
musculature of body
155
lung
144
intestine
135
bodily fluid
131
pancreas
128
blood
117
vasculature
116
skin of body
112
limb
96
heart
92
embryo
90
large intestine
84
blood vessel
83
eye
73
extraembryonic component
61
liver
58
stomach
51
mammary gland
48
prostate gland
46
bone element
45
lymph node
43
penis
40
adipose tissue
39
small intestine
37
placenta
35
ureter
31
artery
30
adrenal gland
25
gonad
23
thymus
21
esophagus
20
spinal cord
17
spleen
17
uterus
15
testis
13
vein
12
lymphoid tissue
11
lymphatic vessel
10
bronchus
10
thyroid gland
9
mouth
9
nerve
9
ovary
8
bone marrow
6
breast
5
tongue
5
trachea
4
skeleton
4
urinary bladder
4
vagina
2
nose
1
pituitary gland
Project
4159
AMP
110
KPMP
29
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
5595
hg19
GRCh38
4
hg18
annotation_type!
gene expression
representative DNase hypersensitivity sites
target gene predictions
assembly!
GRCh38
BIOSAMPLE
TYPE
4333 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
histone modifications
binding sites
accessible chromatin
differential activity
variant allelic effects
chromatin state
eQTL
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
Fine-mapped variants
cell line
A549
21
1
2
1
breast cancer cell
11
9
MCF-7
9
2
3
1
EndoC_BH1
1
1
7
3
1
K562
7
1
2
1
1
+ See 751 more…
tissue
stomach
40
1
3
heart
37
1
1
2
2
brain
29
3
1
1
1
kidney
29
2
1
1
1
1
muscle of arm
33
1
+ See 198 more…
primary cell
CD8-positive, alpha-beta T cell
7
30
3
1
common myeloid progenitor, CD34-positive
27
B cell
14
3
CD4-positive, alpha-beta memory T cell
14
foreskin fibroblast
6
2
4
1
+ See 323 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
1
1
1
adipocyte
4
1
1
4
4
embryonic stem cell
1
1
6
5
T-cell acute lymphoblastic leukemia
5
3
neuroblastoma cell line
6
2
+ See 94 more…
stem cell
H1-hESC
1
See all biosamples
Download