Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
gene expression
372
target gene predictions
367
candidate regulatory elements
210
histone modifications
197
chromatin state
152
differential activity
80
variant allelic effects
77
binding sites
46
eQTL
5
hQTL
4
caQTL
3
meQTL
3
sQTL
1
other
Date released
487
September, 2022
334
February, 2021
333
November, 2021
188
May, 2021
110
September, 2023
105
February, 2024
86
May, 2020
56
January, 2021
53
June, 2020
42
March, 2023
41
May, 2024
40
May, 2022
37
January, 2022
October, 2022
23
January, 2020
19
April, 2020
17
August, 2021
9
November, 2022
7
October, 2019
6
August, 2017
4
February, 2023
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1603
bed bed3+
401
bigWig
164
bed bed9
154
tsv
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1956
Homo sapiens
Biosample type
2524
tissue
2261
cell line
2001
primary cell
396
in vitro differentiated cells
4
stem cell
Organ
588
epithelium
248
connective tissue
138
vasculature
119
kidney
102
pancreas
97
skin of body
93
blood vessel
46
liver
44
mammary gland
41
musculature of body
39
extraembryonic component
39
penis
33
brain
32
lung
29
heart
23
artery
23
intestine
22
embryo
22
eye
19
vein
17
lymphatic vessel
16
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
prostate gland
9
blood
9
bodily fluid
9
placenta
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
limb
1
testis
1
thymus
Project
1480
AMP
333
ENCODE
110
KPMP
57
T1D
19
LungMap
2
community
Genome assembly (visualization)
1801
hg19
735
GRCh38
annotation_type!
gene expression
month_released!
October, 2022
organ_slims!
skeleton
BIOSAMPLE
TYPE
2001 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
variant allelic effects
binding sites
eQTL
hQTL
caQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
5
7
30
1
B cell
6
10
17
8
CD4-positive, alpha-beta memory T cell
9
14
9
+ See 403 more…
See all biosamples
Download