Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 1656candidate regulatory elements
  • 1326target gene predictions
  • 969histone modifications
  • 911chromatin state
  • 877accessible chromatin
  • 796binding sites
  • gene expression
  • 179eQTL
  • 153differential activity
  • 126variant allelic effects
  • 73Fine-mapped variants
  • 10caQTL
  • 7sQTL
  • 5hQTL
  • 5pQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2436September, 2022
  • 2368February, 2021
  • 327November, 2021
  • 296May, 2021
  • 291February, 2024
  • 283June, 2020
  • 140May, 2020
  • 105March, 2020
  • 103January, 2022
  • 101September, 2023
  • 97October, 2022
  • 79August, 2021
  • 58January, 2020
  • 56January, 2021
  • 54March, 2023
  • 49May, 2022
  • 44November, 2022
  • 37May, 2024
  • 34August, 2017
  • 28February, 2023
  • 25March, 2025
  • 23February, 2020
  • 16April, 2020
  • 12October, 2019
  • 11November, 2019
  • 8April, 2019
  • 8May, 2019
  • 4February, 2025
  • 3September, 2018
  • 2January, 2025
  • 2November, 2020
  • 1August, 2020
  • 1August, 2022
  • 1June, 2021
Available data
  • 5915bed bed3+
  • 837bed bed9
  • 510bigWig
  • 258tsv
  • 34bed bed9+
  • 32bigBed bed9
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
  • 2csv
Organism
  • 7056Homo sapiens
Collection Tags
  • 2427EpiMap
  • 1824ChIP-Atlas
  • 906ENCODE
  • 415AMP
  • 400T2DKP
  • 398DGA
  • 324T1D
  • 181BLUEPRINT
  • 1744DN
  • 130 T2DKP
  • 108T2D
  • 98eQTLCatalogue
  • 96CMDGA
  • 96KPMP
  • 84GTEx
  • 51HPAP
  • 29STARNET
  • 24FNIH_projects-heart
  • 12ROADMAP
  • 11FNIH_projects-liver
Biosample type
  • 2486tissue
  • 2321cell line
  • 1897primary cell
  • 394in vitro differentiated cells
  • 4stem cell
Organ
  • vasculature
  • 2858bodily fluid
  • 2847blood
  • 2821blood vessel
  • 2657vein
  • 705epithelium
  • 450kidney
  • 448brain
  • 429connective tissue
  • 368musculature of body
  • 310lung
  • 286intestine
  • 239limb
  • 236heart
  • 229pancreas
  • 205embryo
  • 202skin of body
  • 172large intestine
  • 146extraembryonic component
  • 138liver
  • 117stomach
  • 108eye
  • 87mammary gland
  • 85bone element
  • 84adipose tissue
  • 84small intestine
  • 81uterus
  • 77prostate gland
  • 73placenta
  • 72adrenal gland
  • 70artery
  • 64penis
  • 64ureter
  • 62lymph node
  • 49thymus
  • 48gonad
  • 43esophagus
  • 42spinal cord
  • 33spleen
  • 25testis
  • 23lymphoid tissue
  • 23nerve
  • 22ovary
  • 22thyroid gland
  • 21lymphatic vessel
  • 18mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 12breast
  • 12pituitary gland
  • 9tongue
  • 9urinary bladder
  • 9vagina
  • 5trachea
  • 4nose
Project
  • 6587AMP
  • 327ENCODE
  • 96KPMP
  • 60T1D
  • 16LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 6783hg19
  • 1814GRCh38
  • 4hg18
annotation_type!
  • gene expression
organ_slims!
  • vasculature
BIOSAMPLE
TYPE

7104 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
chromatin state
accessible chromatin
binding sites
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
sQTL
hQTL
pQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
heart3720121512
stomach402111931
kidney291421610111
brain29163182121
lung3317161
cell line
HeLa-S355531
A549211911812
H1-hESC1391112
K5627231712
MCF-7962513
primary cell
monocyte2861814121
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell753014
B cell171086
endothelial cell371152122
in vitro differentiated cells
hematopoietic multipotent progenitor cell191011011
neural progenitor cell5515410
adipocyte461641
embryonic stem cell11561
mesenchymal stem cell331211
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego