Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 89accessible chromatin
  • 88candidate regulatory elements
  • 78target gene predictions
  • gene expression
  • 48chromatin state
  • 31binding sites
  • 25histone modifications
  • 21eQTL
  • 16variant allelic effects
  • 12differential activity
  • 6Fine-mapped variants
  • 3caQTL
  • 2pQTL
  • 2sQTL
Date released
  • 120September, 2022
  • 87February, 2021
  • 50November, 2021
  • 20June, 2020
  • 14February, 2024
  • 13May, 2021
  • 12October, 2022
  • 10August, 2021
  • 10May, 2020
  • 10May, 2024
  • 9January, 2020
  • 9March, 2020
  • 8September, 2023
  • 7August, 2017
  • 7November, 2022
  • 6January, 2022
  • 6March, 2023
  • 3April, 2020
  • 3May, 2022
  • 2February, 2020
  • 2January, 2021
  • 2January, 2025
  • 2July, 2025
  • 2November, 2020
  • 2October, 2019
  • 2September, 2018
  • 1February, 2023
  • 1June, 2021
Available data
  • 347bed bed3+
  • 55bigWig
  • 41bed bed9
  • 23tsv
  • 2bigBed bed9
  • 2csv
  • 1bed bed3
  • 1bed narrowPeak
  • 1bigBed narrowPeak
Organism
  • 421Homo sapiens
Collection Tags
  • 120EpiMap
  • 67T2DKP
  • 65AMP
  • 65ChIP-Atlas
  • 53ENCODE
  • 43DGA
  • 25 T2DKP
  • 10CMDGA
  • 9T1D
  • 8GTEx
  • 8HPAP
  • 7T2D
  • 6FNIH_projects-heart
  • 6KPMP
  • 6eQTLCatalogue
  • 2FNIH_projects-liver
  • 1BLUEPRINT
Biosample type
  • 264primary cell
  • 77tissue
  • 48in vitro differentiated cells
  • 31cell line
  • 1stem cell
Organ
  • 2868vasculature
  • 2852bodily fluid
  • 2841blood
  • 2814blood vessel
  • 2657vein
  • 708epithelium
  • 450kidney
  • 448brain
  • 421connective tissue
  • 375musculature of body
  • 310lung
  • 286intestine
  • 239limb
  • 237heart
  • 229pancreas
  • 205embryo
  • 202skin of body
  • 172large intestine
  • 146extraembryonic component
  • 133liver
  • 117stomach
  • 108eye
  • 87mammary gland
  • 85bone element
  • 84small intestine
  • 81uterus
  • 77prostate gland
  • 74adipose tissue
  • 73placenta
  • 72adrenal gland
  • 67artery
  • 64penis
  • 64ureter
  • 62lymph node
  • 49thymus
  • 48gonad
  • 43esophagus
  • 42spinal cord
  • 33spleen
  • 25testis
  • 23lymphoid tissue
  • 23nerve
  • 22ovary
  • 22thyroid gland
  • 21lymphatic vessel
  • 18mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 12breast
  • 12pituitary gland
  • 9tongue
  • 9urinary bladder
  • 9vagina
  • 5trachea
  • 4nose
Project
  • 352AMP
  • 50ENCODE
  • 6KPMP
  • 4ITG
  • 4community
  • 3LungMap
  • 2T1D
Genome assembly (visualization)
  • 393hg19
  • 131GRCh38
  • 2hg18
Encyclopedia version
  • 1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
annotation_type!
  • gene expression
BIOSAMPLE
TYPE

421 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
candidate regulatory elements
target gene predictions
chromatin state
binding sites
histone modifications
eQTL
variant allelic effects
differential activity
Fine-mapped variants
caQTL
pQTL
sQTL
primary cell
fibroblast1634126
pericyte cell103101
fibroblast of lung6442
foreskin fibroblast162142
osteoblast522132
tissue
adipose tissue2786141
omental fat pad252223
subcutaneous adipose tissue221613
subcutaneous abdominal adipose tissue51
cartilage tissue122
in vitro differentiated cells
adipocyte446611
mesenchymal stem cell133211
chondrocyte5
fibroblast11
Adipose SGBS cell line (adipocyte)1
cell line
GM23248121111
fibroblast of cardiac tissue212
HT1080211
foreskin fibroblast111
adipose tissue derived mesenchymal stem cell11
stem cell
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego