Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • gene expression
  • 212accessible chromatin
  • 122target gene predictions
  • 109candidate regulatory elements
  • 92differential activity
  • 53chromatin state
  • 43binding sites
  • 41variant allelic effects
  • 28histone modifications
  • 3eQTL
  • 2caQTL
Date released
  • 151September, 2022
  • 127November, 2021
  • 111February, 2021
  • 62September, 2023
  • 60February, 2024
  • 29March, 2023
  • 25June, 2020
  • 20January, 2021
  • 17May, 2021
  • 15May, 2020
  • 15November, 2022
  • 14January, 2020
  • 12February, 2023
  • 11August, 2021
  • 9May, 2024
  • 7April, 2020
  • 6October, 2022
  • 5October, 2019
  • 3August, 2017
  • 2March, 2020
  • 2May, 2022
  • 1February, 2020
  • 1November, 2019
Available data
  • 557bed bed3+
  • 167bigWig
  • 90tsv
  • 50bed bed9
  • 14bigBed narrowPeak
  • 3bam
  • 3bed gappedPeak
  • 3xls
  • 2bigBed bed9
Organism
  • 705Homo sapiens
Collection Tags
  • 148T2DKP
  • 144EpiMap
  • 139AMP
  • 81ChIP-Atlas
  • 80DGA
  • 62KPMP
  • 58ENCODE
  • 41 T2DKP
  • 35HPAP
  • 30CMDGA
  • 27T1D
  • 6FNIH_projects-heart
  • 4T2D
  • 3FNIH_projects-liver
Biosample type
  • 593primary cell
  • 59tissue
  • 35cell line
  • 18in vitro differentiated cells
Organ
  • 2875vasculature
  • 2858bodily fluid
  • 2847blood
  • 2821blood vessel
  • 2657vein
  • 705epithelium
  • 450kidney
  • 448brain
  • 429connective tissue
  • 368musculature of body
  • 310lung
  • 286intestine
  • 239limb
  • 236heart
  • 229pancreas
  • 205embryo
  • 202skin of body
  • 172large intestine
  • 146extraembryonic component
  • 138liver
  • 117stomach
  • 108eye
  • 87mammary gland
  • 85bone element
  • 84adipose tissue
  • 84small intestine
  • 81uterus
  • 77prostate gland
  • 73placenta
  • 72adrenal gland
  • 70artery
  • 64penis
  • 64ureter
  • 62lymph node
  • 49thymus
  • 48gonad
  • 43esophagus
  • 42spinal cord
  • 33spleen
  • 25testis
  • 23lymphoid tissue
  • 23nerve
  • 22ovary
  • 22thyroid gland
  • 21lymphatic vessel
  • 18mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 12breast
  • 12pituitary gland
  • 9tongue
  • 9urinary bladder
  • 9vagina
  • 5trachea
  • 4nose
Project
  • 487AMP
  • 127ENCODE
  • 62KPMP
  • 20T1D
  • 7LungMap
  • 2community
Genome assembly (visualization)
  • 608hg19
  • 234GRCh38
annotation_type!
  • gene expression
BIOSAMPLE
TYPE

705 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell157322112
hepatocyte8321124
endothelial cell of umbilical vein246521
foreskin keratinocyte4114
keratinocyte2533112
tissue
pigmented layer of retina20
breast epithelium1352
esophagus squamous epithelium1262
kidney epithelium11
pancreatic ductal cell2
cell line
EndoC_BH18131
keratinocyte31
choroid plexus epithelial cell111
colon epithelial cell111
epithelial cell of prostate111
in vitro differentiated cells
retinal pigment epithelial cell6
hepatocyte121
foreskin keratinocyte111
mammary gland epithelial cell111
dermis microvascular lymphatic vessel endothelial cell11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego