Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 147candidate regulatory elements
  • 81target gene predictions
  • 74chromatin state
  • 31accessible chromatin
  • 13eQTL
  • gene expression
  • 7Fine-mapped variants
  • 7binding sites
  • 7histone modifications
  • 7variant allelic effects
  • 6caQTL
  • 4differential activity
Date released
  • 204September, 2022
  • 92February, 2021
  • 12July, 2025
  • 11November, 2021
  • 10February, 2024
  • 9March, 2020
  • 6June, 2020
  • 6May, 2021
  • 5January, 2020
  • 5May, 2020
  • 4March, 2025
  • 4October, 2025
  • 3August, 2017
  • 3May, 2022
  • 3October, 2022
  • 2February, 2020
  • 2May, 2019
  • 1August, 2021
  • 1January, 2022
  • 1October, 2019
Available data
  • 284bed bed3+
  • 71bed bed9
  • 21tsv
  • 16bigWig
  • 4bed bed3
  • 4bed narrowPeak
  • 3bigBed bed9
Organism
  • 384Homo sapiens
Collection Tags
  • 204EpiMap
  • 79ENCODE
  • 26DGA
  • 23 T2DKP
  • 19ChIP-Atlas
  • 18T2DKP
  • 12AMP
  • 9STARNET
  • 8GTEx
  • 4T2D
  • 1T1D
  • 1eQTLCatalogue
Biosample type
  • 309tissue
  • 56primary cell
  • 17cell line
  • 2in vitro differentiated cells
Organ
  • 2879vasculature
  • 2858bodily fluid
  • 2847blood
  • 2825blood vessel
  • 2657vein
  • 708epithelium
  • 450kidney
  • 448brain
  • 435connective tissue
  • 384musculature of body
  • 310lung
  • 286intestine
  • 239limb
  • 236heart
  • 229pancreas
  • 205embryo
  • 202skin of body
  • 172large intestine
  • 146extraembryonic component
  • 142liver
  • 117stomach
  • 108eye
  • 88adipose tissue
  • 87mammary gland
  • 85bone element
  • 84small intestine
  • 81uterus
  • 77prostate gland
  • 74artery
  • 73placenta
  • 72adrenal gland
  • 64penis
  • 64ureter
  • 62lymph node
  • 49thymus
  • 48gonad
  • 43esophagus
  • 42spinal cord
  • 33spleen
  • 25testis
  • 23lymphoid tissue
  • 23nerve
  • 22ovary
  • 22thyroid gland
  • 21lymphatic vessel
  • 18mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 12breast
  • 12pituitary gland
  • 9tongue
  • 9urinary bladder
  • 9vagina
  • 5trachea
  • 4nose
Project
  • 373AMP
  • 11ENCODE
Genome assembly (visualization)
  • 362hg19
  • 101GRCh38
Encyclopedia version
  • 1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
  • 1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
  • 1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
  • 1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
annotation_type!
  • gene expression
BIOSAMPLE
TYPE

384 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
eQTL
Fine-mapped variants
binding sites
histone modifications
variant allelic effects
caQTL
differential activity
tissue
muscle of arm33161611
muscle of leg2714152
muscle of back281313
psoas muscle7841
gastrocnemius medialis8541
primary cell
skeletal muscle satellite cell222611
skeletal muscle fiber52
skeletal muscle cell21111
type I muscle cell1311
type II muscle cell1311
cell line
LHCN-M2211111
A673221
SJCRH302111
in vitro differentiated cells
myotube11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego