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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1684
candidate regulatory elements
1341
target gene predictions
972
histone modifications
842
accessible chromatin
811
binding sites
122
variant allelic effects
40
chromatin state
13
caQTL
10
eQTL
hQTL
2
meQTL
2
other
2
pQTL
2
variant to gene
1
sQTL
Date released
2388
February, 2021
1652
September, 2022
327
November, 2021
292
February, 2024
281
June, 2020
281
May, 2021
133
May, 2020
99
October, 2022
64
January, 2020
56
January, 2021
52
August, 2021
44
March, 2020
39
May, 2024
34
August, 2017
19
April, 2020
19
November, 2022
15
May, 2022
13
November, 2019
9
October, 2019
7
February, 2023
5
January, 2022
5
September, 2023
3
September, 2018
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
Available data
5844
bed bed3+
897
tsv
856
bed bed9
509
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5798
Homo sapiens
Biosample type
2116
cell line
1772
tissue
1609
primary cell
341
in vitro differentiated cells
4
stem cell
Organ
557
epithelium
338
connective tissue
309
brain
309
kidney
281
musculature of body
239
lung
228
intestine
190
bodily fluid
181
blood
178
embryo
175
heart
175
limb
166
vasculature
165
skin of body
159
pancreas
137
large intestine
123
blood vessel
112
extraembryonic component
103
liver
eye
93
stomach
76
uterus
73
mammary gland
70
bone element
64
small intestine
63
prostate gland
57
adrenal gland
56
placenta
54
lymph node
54
penis
51
ureter
49
adipose tissue
46
artery
38
thymus
37
gonad
33
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
lymphatic vessel
ovary
17
thyroid gland
17
vein
15
skeleton
14
bronchus
14
nerve
13
mouth
11
bone marrow
11
pituitary gland
9
breast
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5437
AMP
327
ENCODE
60
T1D
19
LungMap
1
ITG
Genome assembly (visualization)
5836
hg19
831
GRCh38
1
hg18
annotation_type!
hQTL
organ_slims!
eye
ovary
BIOSAMPLE
TYPE
5844 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
variant allelic effects
chromatin state
caQTL
eQTL
meQTL
other
pQTL
variant to gene
sQTL
cell line
HeLa-S3
5
55
1
A549
21
19
1
1
2
H1-hESC
1
39
1
1
2
K562
7
23
1
1
2
1
MCF-7
9
6
2
1
3
+ See 757 more…
tissue
heart
37
20
1
5
1
2
stomach
40
21
1
3
kidney
29
14
2
10
1
1
1
brain
29
16
3
2
1
1
muscle of arm
33
16
1
1
+ See 212 more…
primary cell
monocyte
2
86
18
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
common myeloid progenitor, CD34-positive
27
14
B cell
17
10
6
endothelial cell
3
7
1
15
2
2
2
1
+ See 324 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
4
1
4
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 102 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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