Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 320accessible chromatin
  • 224gene expression
  • 144target gene predictions
  • 119differential activity
  • 38candidate regulatory elements
  • 11eQTL
  • 7caQTL
  • 6binding sites
  • 2pQTL
  • 2sQTL
  • 1variant allelic effects
Date released
  • 333November, 2021
  • 286September, 2023
  • 56January, 2021
  • 54February, 2024
  • 51August, 2021
  • 40May, 2024
  • 19April, 2020
  • 9March, 2023
  • 7February, 2021
  • 7October, 2022
  • 6May, 2022
  • 3November, 2022
  • 2January, 2025
  • 1February, 2023
Available data
  • 520bed bed3+
  • 324tsv
  • 303bigWig
  • 25txt
  • 2csv
Organism
  • 873Homo sapiens
Collection Tags
  • 360AMP
  • 338T2DKP
  • 281KPMP
  • 118DGA
  • 61 T2DKP
  • 59T1D
  • 26FNIH_projects-heart
  • 12CMDGA
  • 12FNIH_projects-liver
  • 6ENCODE
Biosample type
  • 836primary cell
  • 20tissue
  • 9cell line
  • 7in vitro differentiated cells
  • 1stem cell
Organ
  • 369epithelium
  • 178kidney
  • 97connective tissue
  • 61vasculature
  • 40pancreas
  • 39blood vessel
  • 31liver
  • 25musculature of body
  • 19intestine
  • 12heart
  • 12lung
  • 12lymphatic vessel
  • 10adrenal gland
  • 10skin of body
  • 9stomach
  • 6large intestine
  • 6mammary gland
  • 5artery
  • 4esophagus
  • 4eye
  • 4small intestine
  • 3bone element
  • 3bone marrow
  • 3brain
  • 3bronchus
  • 3extraembryonic component
  • 2embryo
  • 2gonad
  • 2ovary
  • 2placenta
  • 2thyroid gland
  • 2uterus
  • 1thymus
Project
  • 333ENCODE
  • 281KPMP
  • 163AMP
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 534hg19
  • 411GRCh38
annotation_type!
  • histone modifications
award.rfa!
  • AMP
BIOSAMPLE
TYPE

874 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
differential activity
candidate regulatory elements
eQTL
caQTL
binding sites
pQTL
sQTL
variant allelic effects
primary cell
endothelial cell1447311
fibroblast1643
pericyte cell1092
smooth muscle cell816211
macrophage12123
tissue
kidney771
cartilage tissue22
synovial joint1
cell line
induced pluripotent stem cell7
EndoC_BH12
in vitro differentiated cells
ESC dervived hypothalamic neuron (arcuate nucleus)1
ESC dervived hypothalamic progenitor (arcuate nucleus)1
Human Mesenchymal Cell derived Adipocytes1
Human Mesenchymal Cell derived Osteoblasts1
Progenitor cell of Hypothalamus (neural progenitor cell)1
stem cell
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego