Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
45
accessible chromatin
35
gene expression
33
differential activity
29
target gene predictions
8
variant allelic effects
4
candidate regulatory elements
histone modifications
3
chromatin state
2
binding sites
Date released
41
March, 2023
28
May, 2021
20
January, 2021
18
November, 2021
15
February, 2024
13
September, 2022
7
August, 2018
6
February, 2021
5
October, 2019
1
February, 2023
1
June, 2020
1
June, 2021
1
March, 2020
1
May, 2020
1
November, 2019
Available data
86
bed bed3+
59
tsv
41
bigWig
14
bigBed narrowPeak
3
bam
3
bed bed9
3
bed gappedPeak
3
csv
3
xls
Organism
159
Homo sapiens
Biosample type
123
primary cell
tissue
33
cell line
3
in vitro differentiated cells
Organ
863
epithelium
349
kidney
341
connective tissue
189
bodily fluid
180
blood
175
vasculature
172
embryo
168
skin of body
159
pancreas
127
lung
115
blood vessel
112
brain
86
liver
81
mammary gland
69
uterus
65
musculature of body
61
bone element
58
lymph node
penis
58
prostate gland
53
intestine
46
extraembryonic component
37
eye
37
heart
37
large intestine
29
artery
21
vein
20
lymphatic vessel
bronchus
12
placenta
11
adrenal gland
11
bone marrow
11
gonad
11
stomach
10
esophagus
10
pituitary gland
8
mouth
8
testis
7
limb
7
spinal cord
5
lymphoid tissue
4
adipose tissue
4
nose
4
small intestine
3
thyroid gland
3
trachea
2
ovary
1
pericardium
1
thymus
Project
119
AMP
20
T1D
18
ENCODE
2
community
Genome assembly (visualization)
91
hg19
27
GRCh38
annotation_type!
histone modifications
biosample_type!
tissue
organ_slims!
bronchus
penis
BIOSAMPLE
TYPE
159 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
differential activity
target gene predictions
variant allelic effects
candidate regulatory elements
chromatin state
binding sites
primary cell
pancreatic beta cell
8
3
3
3
1
pancreatic alpha cell
7
3
3
3
1
pancreatic ductal cell
6
3
3
3
1
1
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
3
3
4
1
+ See 12 more…
cell line
EndoC_BH1
8
8
3
1
1
Panc1
2
2
1
8988T
1
1
1
HPDE6-E6E7
1
1
1
pancreatic ductal cell
1
in vitro differentiated cells
pancreatic ductal cell
3
See all biosamples
Download