Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
253
gene expression
208
accessible chromatin
152
candidate regulatory elements
148
target gene predictions
92
differential activity
82
chromatin state
44
binding sites
36
variant allelic effects
histone modifications
4
eQTL
2
caQTL
Date released
237
September, 2022
196
February, 2021
155
September, 2023
114
November, 2021
73
February, 2024
38
March, 2023
37
May, 2021
30
June, 2020
20
August, 2021
20
January, 2021
15
November, 2022
13
May, 2020
12
February, 2023
12
January, 2020
9
February, 2020
7
April, 2020
6
August, 2018
6
March, 2020
6
October, 2022
5
October, 2019
3
August, 2017
2
March, 2024
2
May, 2022
1
January, 2022
1
July, 2020
1
November, 2019
Available data
589
bed bed3+
324
tsv
167
bigWig
79
bed bed9
78
txt
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
1021
Homo sapiens
Biosample type
804
primary cell
153
tissue
35
cell line
29
in vitro differentiated cells
Organ
921
epithelium
646
kidney
435
connective tissue
brain
368
musculature of body
307
lung
intestine
271
pancreas
258
vasculature
249
heart
242
limb
204
embryo
198
blood vessel
193
bodily fluid
191
skin of body
183
blood
169
large intestine
142
liver
141
extraembryonic component
118
stomach
105
eye
88
adipose tissue
84
small intestine
83
bone element
82
mammary gland
81
uterus
73
adrenal gland
71
prostate gland
70
artery
70
placenta
64
ureter
59
penis
58
lymph node
49
gonad
48
thymus
45
esophagus
43
spinal cord
34
spleen
25
nerve
25
testis
23
lymphoid tissue
23
ovary
23
thyroid gland
22
vein
20
lymphatic vessel
19
mouth
18
skeleton
15
bronchus
13
breast
12
pituitary gland
11
bone marrow
10
tongue
10
urinary bladder
10
vagina
4
nose
3
trachea
1
pericardium
Project
723
AMP
155
KPMP
114
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
671
hg19
245
GRCh38
annotation_type!
histone modifications
organ_slims!
brain
intestine
BIOSAMPLE
TYPE
1021 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
candidate regulatory elements
target gene predictions
differential activity
chromatin state
binding sites
variant allelic effects
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
2
hepatocyte
13
8
1
3
1
1
2
epithelial cell of proximal tubule
16
1
2
1
1
1
1
glomerular endothelial cell
14
2
2
1
1
1
endothelial cell of umbilical vein
2
6
4
5
2
1
+ See 144 more…
tissue
placenta
1
26
15
14
1
1
pigmented layer of retina
20
chorionic villus
8
4
4
breast epithelium
1
5
3
2
esophagus squamous epithelium
1
6
2
2
+ See 19 more…
cell line
EndoC_BH1
8
8
1
3
1
HTR-8/Svneo
1
1
1
keratinocyte
3
epithelial cell of prostate
1
1
glomerular visceral epithelial cell
1
1
+ See 4 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
trophoblast cell
2
2
1
hepatocyte
2
1
1
hepatocyte(AFP)
3
pancreatic ductal cell
3
+ See 5 more…
See all biosamples
Download