Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 113candidate regulatory elements
  • 73target gene predictions
  • 59chromatin state
  • 21accessible chromatin
  • histone modifications
  • 6binding sites
  • 3eQTL
  • 3gene expression
  • 3variant allelic effects
Date released
  • 164September, 2022
  • 63February, 2021
  • 19November, 2021
  • 10June, 2020
  • 6February, 2024
  • 6May, 2021
  • 4August, 2017
  • 3January, 2022
  • 3March, 2024
  • 2March, 2020
  • 1October, 2022
Available data
  • 223bed bed3+
  • 55bed bed9
  • 11bigWig
  • 3tsv
Organism
  • 281Homo sapiens
Collection Tags
  • 165EpiMap
  • 59ENCODE
  • 19AMP
  • 19T2DKP
  • 15ChIP-Atlas
  • 11DGA
  • 3GTEx
  • 3T1D
  • 3T2D
  • 3eQTLCatalogue
  • 24DN
Biosample type
  • 228tissue
  • 31cell line
  • 22primary cell
Organ
  • 2905vasculature
  • 2842blood vessel
  • 2834bodily fluid
  • 2824blood
  • 2657vein
  • 930epithelium
  • 646kidney
  • 455connective tissue
  • 419brain
  • 373musculature of body
  • 307lung
  • 281intestine
  • 271pancreas
  • 251heart
  • 242limb
  • 204embryo
  • 191skin of body
  • 169large intestine
  • 149liver
  • 141extraembryonic component
  • 118stomach
  • 105eye
  • 98adipose tissue
  • 84small intestine
  • 83bone element
  • 82mammary gland
  • 81uterus
  • 74artery
  • 73adrenal gland
  • 71prostate gland
  • 70placenta
  • 64ureter
  • 59penis
  • 58lymph node
  • 49gonad
  • 48thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 25nerve
  • 25testis
  • 23lymphatic vessel
  • 23lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 19mouth
  • 18skeleton
  • 15bronchus
  • 13breast
  • 12pituitary gland
  • 11bone marrow
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 4nose
  • 3trachea
  • 1pericardium
Project
  • 262AMP
  • 19ENCODE
Genome assembly (visualization)
  • 275hg19
  • 79GRCh38
annotation_type!
  • histone modifications
BIOSAMPLE
TYPE

281 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
eQTL
gene expression
variant allelic effects
tissue
small intestine29171511
large intestine2714131
sigmoid colon10751
transverse colon85411
Peyer's patch7331
cell line
HT-2922111
HCT116231
SW48021111
HCT-116 cell112
RKO111
primary cell
colon epithelial cell33
enterocyte33
enteric smooth muscle cell22
enterocyte of epithelium of small intestine11
paneth cell11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego