Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 96target gene predictions
  • 69candidate regulatory elements
  • 36chromatin state
  • 10accessible chromatin
  • 6binding sites
  • histone modifications
  • 2eQTL
  • 2gene expression
Date released
  • 98September, 2022
  • 52July, 2026
  • 41February, 2021
  • 7June, 2020
  • 6November, 2021
  • 5May, 2021
  • 3August, 2017
  • 3February, 2024
  • 2January, 2022
  • 2March, 2024
  • 1March, 2020
  • 1October, 2022
Available data
  • 186bed bed3+
  • 33bed bed9
  • 3bigWig
  • 2tsv
Organism
  • 221Homo sapiens
Collection Tags
  • 99EpiMap
  • 52ENCODE-rE2G
  • 37ENCODE
  • 12ChIP-Atlas
  • 6AMP
  • 6DGA
  • 6T2DKP
  • 24DN
  • 2GTEx
  • 2T1D
  • 2T2D
  • 2eQTLCatalogue
Biosample type
  • 160tissue
  • 55cell line
  • 6primary cell
Organ
  • 3341blood
  • 2894vasculature
  • 2855blood vessel
  • 2828bodily fluid
  • 2658vein
  • 924epithelium
  • 855brain
  • 750kidney
  • 493connective tissue
  • 482heart
  • 436lung
  • 379musculature of body
  • 350intestine
  • 313pancreas
  • 283skin of body
  • 242limb
  • 226liver
  • 221large intestine
  • 204embryo
  • 169extraembryonic component
  • 157eye
  • 141adipose tissue
  • 139stomach
  • 111muscle organ
  • 102adrenal gland
  • 100bone element
  • 99mammary gland
  • 97small intestine
  • 94placenta
  • 92thymus
  • 91uterus
  • 83artery
  • 80prostate gland
  • 73ureter
  • 63gonad
  • 63spleen
  • 60__MARKER__
  • 59penis
  • 58lymph node
  • 49spinal cord
  • 48esophagus
  • 47thyroid gland
  • 32ovary
  • 30testis
  • 25nerve
  • 24skeleton
  • 23lymphoid tissue
  • 21mouth
  • 20lymphatic vessel
  • 15breast
  • 15bronchus
  • 13urinary bladder
  • 12pituitary gland
  • 12tongue
  • 12vagina
  • 11bone marrow
  • 4nose
  • 3trachea
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 215AMP
  • 6ENCODE
Genome assembly (visualization)
  • 165hg19
  • 95GRCh38
annotation_type!
  • histone modifications
BIOSAMPLE
TYPE

221 results

search-icontable-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
binding sites
eQTL
gene expression
tissue
large intestine2827131
sigmoid colon101051
transverse colon98411
colonic mucosa443
mucosa of rectum243
cell line
HCT1161921
HT-2932111
SW48022111
Caco-231
HCT-116 cell112
primary cell
colon epithelial cell33
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego