Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 117target gene predictions
  • 75candidate regulatory elements
  • 35chromatin state
  • 32accessible chromatin
  • 18binding sites
  • histone modifications
  • 3eQTL
  • 2gene expression
  • 1variant allelic effects
Date released
  • 102September, 2022
  • 92July, 2026
  • 55February, 2021
  • 10November, 2021
  • 8June, 2020
  • 5May, 2021
  • 4October, 2022
  • 3January, 2022
  • 2March, 2024
  • 1August, 2017
  • 1February, 2024
Available data
  • 247bed bed3+
  • 34bed bed9
  • 5bigWig
  • 2tsv
Organism
  • 283Homo sapiens
Collection Tags
  • 102EpiMap
  • 54ENCODE-rE2G
  • 45ENCODE
  • 38HDMA
  • 22ChIP-Atlas
  • 10AMP
  • 10T2DKP
  • 6DGA
  • 3T1D
  • 3T2D
  • 3eQTLCatalogue
  • 2GTEx
Biosample type
  • 167primary cell
  • 81cell line
  • 28tissue
  • 7in vitro differentiated cells
Organ
  • 3341blood
  • 2894vasculature
  • 2855blood vessel
  • 2828bodily fluid
  • 2658vein
  • 924epithelium
  • 855brain
  • 750kidney
  • 493connective tissue
  • 482heart
  • 436lung
  • 379musculature of body
  • 350intestine
  • 313pancreas
  • 283skin of body
  • 242limb
  • 226liver
  • 221large intestine
  • 204embryo
  • 169extraembryonic component
  • 157eye
  • 141adipose tissue
  • 139stomach
  • 111muscle organ
  • 102adrenal gland
  • 99mammary gland
  • 98bone element
  • 97small intestine
  • 94placenta
  • 92thymus
  • 91uterus
  • 83artery
  • 80prostate gland
  • 73ureter
  • 63gonad
  • 63spleen
  • 60__MARKER__
  • 59penis
  • 58lymph node
  • 49spinal cord
  • 48esophagus
  • 47thyroid gland
  • 32ovary
  • 30testis
  • 25nerve
  • 23lymphoid tissue
  • 22skeleton
  • 21mouth
  • 20lymphatic vessel
  • 15breast
  • 15bronchus
  • 13urinary bladder
  • 12pituitary gland
  • 12tongue
  • 12vagina
  • 11bone marrow
  • 4nose
  • 3trachea
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 273AMP
  • 10ENCODE
Genome assembly (visualization)
  • 186hg19
  • 139GRCh38
annotation_type!
  • histone modifications
BIOSAMPLE
TYPE

283 results

search-icontable-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
binding sites
eQTL
gene expression
variant allelic effects
primary cell
foreskin keratinocyte6114
keratinocyte933411
foreskin fibroblast66114
dermis blood vessel endothelial cell662
fibroblast of dermis5431
cell line
GM2324812111
RPMI79512211
SK-MEL-5221
iPS DF 19.11221
COLO829211
tissue
lower leg skin462
skin of body2113
suprapubic skin23
skin - not sun exposed (suprapubic)1
skin - sun exposed (lower leg)1
in vitro differentiated cells
dermis microvascular lymphatic vessel endothelial cell11
foreskin keratinocyte11
iPS DF 4.7 Cell Line11
skin fibroblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego