Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
69
candidate regulatory elements
44
target gene predictions
36
chromatin state
10
accessible chromatin
5
binding sites
5
histone modifications
2
eQTL
Date released
98
September, 2022
46
February, 2021
7
June, 2020
6
November, 2021
5
May, 2021
3
August, 2017
3
February, 2024
2
January, 2022
1
March, 2020
October, 2022
Available data
136
bed bed3+
33
bed bed9
3
bigWig
tsv
Organism
171
Homo sapiens
Biosample type
132
tissue
33
cell line
6
primary cell
Organ
601
epithelium
398
kidney
390
brain
356
musculature of body
335
connective tissue
306
lung
285
intestine
227
limb
226
heart
201
pancreas
198
bodily fluid
196
vasculature
189
skin of body
187
blood
176
embryo
171
large intestine
155
blood vessel
140
extraembryonic component
123
liver
117
stomach
99
eye
84
bone element
84
small intestine
81
mammary gland
80
uterus
77
prostate gland
72
adrenal gland
72
placenta
66
adipose tissue
64
ureter
60
lymph node
58
artery
56
penis
49
thymus
47
gonad
43
esophagus
37
spinal cord
33
spleen
24
testis
23
lymphoid tissue
22
ovary
22
thyroid gland
21
vein
19
nerve
18
mouth
18
skeleton
16
bronchus
14
lymphatic vessel
13
bone marrow
12
breast
12
pituitary gland
9
tongue
9
urinary bladder
9
vagina
5
trachea
1
pericardium
Project
165
AMP
6
ENCODE
Genome assembly (visualization)
169
hg19
43
GRCh38
annotation_type!
other
biosample_type!
in vitro differentiated cells
files.file_type!
tsv
month_released!
October, 2022
BIOSAMPLE
TYPE
171 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
histone modifications
eQTL
tissue
large intestine
27
14
13
1
1
sigmoid colon
10
7
5
1
transverse colon
8
5
4
1
1
colonic mucosa
4
2
3
1
mucosa of rectum
4
2
3
+ See 5 more…
cell line
HT-29
2
2
1
1
1
1
SW480
2
1
1
1
1
1
HCT116
2
3
1
RKO
1
1
1
1
HCT-116 cell
1
1
1
+ See 3 more…
primary cell
colon epithelial cell
3
3
See all biosamples
Download