Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
175
candidate regulatory elements
115
target gene predictions
98
chromatin state
62
accessible chromatin
47
binding sites
42
gene expression
34
histone modifications
19
eQTL
17
variant allelic effects
8
differential activity
6
Fine-mapped variants
2
caQTL
Date released
257
September, 2022
180
February, 2021
30
June, 2020
23
May, 2021
22
February, 2024
15
October, 2022
11
August, 2017
10
January, 2020
10
March, 2020
10
May, 2020
9
February, 2020
8
January, 2022
7
August, 2021
7
March, 2023
7
November, 2022
3
May, 2022
3
November, 2020
2
March, 2024
2
October, 2019
2
September, 2018
2
September, 2023
1
August, 2018
1
February, 2023
1
January, 2018
1
June, 2021
Available data
465
bed bed3+
87
bed bed9
50
tsv
19
bigWig
7
txt
2
bigBed bed9
1
bigBed narrowPeak
Organism
625
Homo sapiens
Biosample type
243
primary cell
227
tissue
101
cell line
53
in vitro differentiated cells
1
stem cell
Organ
638
epithelium
509
kidney
466
brain
384
connective tissue
364
musculature of body
299
lung
270
intestine
245
heart
244
limb
237
pancreas
222
vasculature
217
bodily fluid
213
embryo
207
blood
194
skin of body
179
blood vessel
168
large intestine
151
liver
143
extraembryonic component
110
stomach
105
eye
89
adipose tissue
86
bone element
81
mammary gland
81
uterus
80
small intestine
78
prostate gland
71
placenta
70
artery
64
penis
64
ureter
63
adrenal gland
62
lymph node
48
gonad
48
thymus
43
spinal cord
41
esophagus
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
vein
21
ovary
21
thyroid gland
19
mouth
18
skeleton
13
breast
13
bronchus
13
pituitary gland
12
lymphatic vessel
10
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
625
AMP
62
ENCODE
15
KPMP
3
LungMap
2
ITG
2
T1D
2
community
Genome assembly (visualization)
565
hg19
122
GRCh38
2
hg18
annotation_type!
pQTL
BIOSAMPLE
TYPE
625 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
gene expression
histone modifications
eQTL
variant allelic effects
differential activity
Fine-mapped variants
caQTL
primary cell
osteoblast
2
2
1
5
3
2
2
fibroblast of lung
6
4
4
2
foreskin fibroblast
6
2
1
1
4
2
fibroblast of dermis
4
4
3
1
fibroblast
2
1
2
6
+ See 41 more…
tissue
large intestine
27
14
13
1
1
adipose tissue
7
8
6
2
1
3
4
1
sigmoid colon
10
7
5
1
subcutaneous adipose tissue
2
1
2
5
6
1
1
3
transverse colon
8
5
4
1
1
+ See 19 more…
cell line
MCF-7
9
6
5
1
3
2
HT-29
2
2
1
1
1
1
GM23248
2
1
1
1
1
1
SW480
2
1
1
1
1
1
T47D
3
2
2
+ See 18 more…
in vitro differentiated cells
adipocyte
4
6
6
4
1
1
1
mesenchymal stem cell
3
3
2
1
1
1
chondrocyte
5
mammary gland epithelial cell
1
1
1
fibroblast
1
1
+ See 9 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download