Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1630candidate regulatory elements
  • target gene predictions
  • 900chromatin state
  • 883histone modifications
  • 844accessible chromatin
  • 779binding sites
  • 615gene expression
  • 189eQTL
  • 172differential activity
  • 135variant allelic effects
  • 84Fine-mapped variants
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
Date released
  • 2639February, 2025
  • 2399February, 2021
  • 1607September, 2022
  • 281September, 2023
  • 268June, 2020
  • 228May, 2021
  • 222November, 2021
  • 172February, 2024
  • 131May, 2020
  • 102January, 2022
  • 101October, 2022
  • 97August, 2021
  • 85January, 2020
  • 82March, 2020
  • 70March, 2023
  • 64February, 2020
  • 49May, 2022
  • 40May, 2024
  • 38March, 2025
  • 32February, 2023
  • 31August, 2017
  • 30March, 2024
  • 28January, 2021
  • 26November, 2022
  • 19April, 2020
  • 12November, 2019
  • 12October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 4445bed bed3+
  • 3501tsv
  • 829bed bed9
  • 531bigWig
  • 108txt
  • 35bigBed bed9
  • 34bed bed9+
  • 13bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
  • 2csv
Organism
  • 8858Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 1709ChIP-Atlas
  • 1596EpiMap
  • 919ENCODE
  • 436DGA
  • 376T1D
  • 325AMP
  • 290T2DKP
  • 281KPMP
  • 202BLUEPRINT
  • 151GTEx
  • 122 T2DKP
  • 111T2D
  • 101eQTLCatalogue
  • 77CMDGA
  • 67HPAP
  • 43STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 4805tissue
  • 2145primary cell
  • 1953cell line
  • in vitro differentiated cells
  • 1stem cell
Organ
  • 2880vasculature
  • 2823blood vessel
  • 2802bodily fluid
  • 2793blood
  • 2654vein
  • 811epithelium
  • 576kidney
  • 389brain
  • 364connective tissue
  • 299musculature of body
  • 233lung
  • 230pancreas
  • 216intestine
  • 207heart
  • 195limb
  • 151skin of body
  • 136liver
  • 130large intestine
  • 108embryo
  • 107extraembryonic component
  • 94eye
  • 89stomach
  • 86adipose tissue
  • 73bone element
  • 71artery
  • 65mammary gland
  • 63prostate gland
  • 61small intestine
  • 56placenta
  • 53lymph node
  • 52adrenal gland
  • 51ureter
  • 47penis
  • 39gonad
  • 35esophagus
  • 35thymus
  • 34spinal cord
  • 26spleen
  • 25uterus
  • 22nerve
  • 22testis
  • 19lymphatic vessel
  • 18lymphoid tissue
  • 17thyroid gland
  • 16ovary
  • 15mouth
  • 15skeleton
  • 13bronchus
  • 10bone marrow
  • 10breast
  • 8tongue
  • 8vagina
  • 7urinary bladder
  • 5trachea
  • 3pituitary gland
  • 1pericardium
Project
  • 8334AMP
  • 281KPMP
  • 222ENCODE
  • 32T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 5323hg19
  • 1559GRCh38
  • 4hg18
annotation_type!
  • target gene predictions
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
TYPE

8906 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
chromatin state
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
sQTL
hQTL
variant to gene
meQTL
other
tissue
whole blood26351
heart372115132
kidney29162101711
stomach40191311
brain2918321121
primary cell
monocyte86181154121
CD8-positive, alpha-beta T cell713043
common myeloid progenitor, CD34-positive2713
endothelial cell311529122
B cell17862
cell line
A5492118112
EndoC_BH1181831
MCF-795213
breast cancer cell119
K56277112
stem cell
H1-hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego