Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • target gene predictions
  • 193accessible chromatin
  • 111candidate regulatory elements
  • 72chromatin state
  • 48histone modifications
  • 36Fine-mapped variants
  • 29eQTL
  • 19gene expression
  • 18differential activity
  • 18variant allelic effects
  • 16binding sites
Date released
  • 151July, 2026
  • 120September, 2022
  • 110February, 2021
  • 36March, 2020
  • 29January, 2020
  • 21June, 2020
  • 19May, 2020
  • 18February, 2020
  • 18January, 2022
  • 18May, 2026
  • 6August, 2017
  • 6October, 2022
  • 4May, 2019
  • 1February, 2024
  • 1February, 2025
  • 1March, 2024
  • 1November, 2019
Available data
  • 401bed bed3+
  • 67tsv
  • 66bed bed9
  • 21bigWig
  • 6bigBed bed9
Organism
  • 559Homo sapiens
Collection Tags
  • 133CATlas
  • 120EpiMap
  • 79ChIP-Atlas
  • 62ENCODE
  • 61GTEx
  • 20DGA
  • 18HDMA
  • 18pyxis
  • 17T1D
  • 17T2D
  • 17eQTLCatalogue
  • 2AMP
Biosample type
  • 303tissue
  • 200primary cell
  • 55cell line
  • 2in vitro differentiated cells
Organ
  • 2871vasculature
  • 2823blood vessel
  • 2796bodily fluid
  • 2787blood
  • 2654vein
  • 830epithelium
  • 594kidney
  • 560brain
  • 435connective tissue
  • 362heart
  • 306musculature of body
  • 257pancreas
  • 251lung
  • 216intestine
  • 195limb
  • 190liver
  • 179skin of body
  • 131embryo
  • 130large intestine
  • 125adipose tissue
  • 119eye
  • 110extraembryonic component
  • 89stomach
  • 75artery
  • 75bone element
  • 68mammary gland
  • 63prostate gland
  • 61small intestine
  • 60__MARKER__
  • 56adrenal gland
  • 56placenta
  • 53lymph node
  • 53penis
  • 52thymus
  • 51ureter
  • 39gonad
  • 38spleen
  • 35esophagus
  • 34spinal cord
  • 25thyroid gland
  • 25uterus
  • 22muscle organ
  • 22nerve
  • 22testis
  • 18lymphatic vessel
  • 18lymphoid tissue
  • 17skeleton
  • 16ovary
  • 15mouth
  • 13bronchus
  • 10bone marrow
  • 10breast
  • 8tongue
  • 8vagina
  • 7urinary bladder
  • 5trachea
  • 3nose
  • 3pituitary gland
  • 1pericardium
Project
  • 560AMP
Genome assembly (visualization)
  • 347hg19
  • 303GRCh38
annotation_type!
  • target gene predictions
BIOSAMPLE
TYPE

560 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
candidate regulatory elements
chromatin state
histone modifications
Fine-mapped variants
eQTL
gene expression
differential activity
variant allelic effects
binding sites
tissue
brain2291832111
caudate nucleus25413211
substantia nigra531331
cerebellum1321322
frontal cortex2223221
primary cell
GABAergic neuron22
glutamatergic neuron15
astrocyte82
medium spiny neuron8
neuron8
cell line
SK-N-DZ1421
SK-N-MC12112
SK-N-SH421
BE(2)-C11112
Daoy1211
in vitro differentiated cells
hippocampal neuron11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego