Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 88accessible chromatin
  • 88candidate regulatory elements
  • target gene predictions
  • 51gene expression
  • 48chromatin state
  • 31binding sites
  • 25eQTL
  • 25histone modifications
  • 16differential activity
  • 16variant allelic effects
  • 8Fine-mapped variants
  • 2caQTL
  • 2pQTL
  • 2sQTL
Date released
  • 109February, 2021
  • 80September, 2022
  • 32November, 2021
  • 20June, 2020
  • 18February, 2024
  • 15September, 2023
  • 12October, 2022
  • 11August, 2021
  • 10January, 2020
  • 10March, 2025
  • 10May, 2024
  • 9February, 2020
  • 9May, 2020
  • 7August, 2017
  • 7March, 2023
  • 7November, 2022
  • 6January, 2022
  • 6March, 2020
  • 3April, 2020
  • 3May, 2021
  • 3May, 2022
  • 3November, 2020
  • 2January, 2025
  • 2October, 2019
  • 2September, 2018
  • 1August, 2018
  • 1February, 2023
  • 1January, 2018
  • 1January, 2021
  • 1June, 2021
Available data
  • 269bed bed3+
  • 75tsv
  • 55bigWig
  • 41bed bed9
  • 7txt
  • 2bigBed bed9
  • 2csv
  • 1bigBed narrowPeak
Organism
  • 402Homo sapiens
Collection Tags
  • 80EpiMap
  • 65ChIP-Atlas
  • 60ENCODE
  • 54DGA
  • 49T2DKP
  • 48AMP
  • 29 T2DKP
  • 15KPMP
  • 12STARNET
  • 10CMDGA
  • 10GTEx
  • 9HPAP
  • 7T1D
  • 7T2D
  • 6FNIH_projects-heart
  • 6eQTLCatalogue
  • 2FNIH_projects-liver
Biosample type
  • 243primary cell
  • 93tissue
  • 38in vitro differentiated cells
  • 28cell line
Organ
  • 2882vasculature
  • 2823blood vessel
  • 2802bodily fluid
  • 2793blood
  • 2654vein
  • 836epithelium
  • 577kidney
  • 402connective tissue
  • 391brain
  • 300musculature of body
  • 233lung
  • 233pancreas
  • 216intestine
  • 208heart
  • 195limb
  • 160skin of body
  • 142liver
  • 131embryo
  • 130large intestine
  • 110extraembryonic component
  • 100eye
  • 89stomach
  • 86adipose tissue
  • 73bone element
  • 71artery
  • 68mammary gland
  • 63prostate gland
  • 61small intestine
  • 56placenta
  • 53lymph node
  • 53penis
  • 52adrenal gland
  • 51ureter
  • 39gonad
  • 35esophagus
  • 35thymus
  • 34spinal cord
  • 26spleen
  • 25uterus
  • 22nerve
  • 22testis
  • 21lymphatic vessel
  • 18lymphoid tissue
  • 17thyroid gland
  • 16ovary
  • 15mouth
  • 15skeleton
  • 13bronchus
  • 10bone marrow
  • 10breast
  • 8tongue
  • 8vagina
  • 7urinary bladder
  • 5trachea
  • 3nose
  • 3pituitary gland
  • 1pericardium
Project
  • 343AMP
  • 32ENCODE
  • 15KPMP
  • 4ITG
  • 4community
  • 3LungMap
  • 1T1D
Genome assembly (visualization)
  • 317hg19
  • 112GRCh38
  • 2hg18
annotation_type!
  • target gene predictions
BIOSAMPLE
TYPE

402 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
candidate regulatory elements
gene expression
chromatin state
binding sites
eQTL
histone modifications
differential activity
variant allelic effects
Fine-mapped variants
caQTL
pQTL
sQTL
primary cell
fibroblast163126
osteoblast522132
foreskin fibroblast16142
pericyte cell1031
fibroblast of lung642
tissue
subcutaneous adipose tissue22618214
adipose tissue2736141
omental fat pad252223
subcutaneous abdominal adipose tissue51
cartilage tissue212
in vitro differentiated cells
adipocyte441611
mesenchymal stem cell13211
chondrocyte5
fibroblast11
Adipose SGBS cell line (adipocyte)1
cell line
GM2324812111
fibroblast of cardiac tissue212
HT108021
adipose tissue derived mesenchymal stem cell11
chondrocyte11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego