Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1709candidate regulatory elements
  • 1354target gene predictions
  • 977histone modifications
  • 942chromatin state
  • 817binding sites
  • 680gene expression
  • 385accessible chromatin
  • 189eQTL
  • 172differential activity
  • 137variant allelic effects
  • 84Fine-mapped variants
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 289June, 2020
  • 33November, 2022
  • 23February, 2024
  • 13May, 2021
  • 10August, 2021
  • 7May, 2022
  • 6February, 2023
  • 3September, 2022
  • 1May, 2020
Available data
  • 903bed bed3+
  • bigWig
  • 9bigBed narrowPeak
  • 3bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 384Homo sapiens
Collection Tags
  • 289ChIP-Atlas
  • 45CMDGA
  • 28DGA
  • 17 T2DKP
  • 17AMP
  • 9T1D
  • 6ENCODE
  • 3T2D
Biosample type
  • 159cell line
  • 90primary cell
  • 79tissue
  • 57in vitro differentiated cells
Organ
  • 52epithelium
  • 33connective tissue
  • 23eye
  • 21brain
  • 15kidney
  • 15pancreas
  • 12blood
  • 12bodily fluid
  • 11musculature of body
  • 10embryo
  • 10intestine
  • 10liver
  • 10vasculature
  • 8blood vessel
  • 8lymph node
  • 8skin of body
  • 7large intestine
  • 6extraembryonic component
  • 6limb
  • 6lung
  • 5bone element
  • 5heart
  • 5prostate gland
  • 4gonad
  • 4mammary gland
  • 3artery
  • 3penis
  • 3stomach
  • 2adipose tissue
  • 2esophagus
  • 2lymphoid tissue
  • 2placenta
  • 2spinal cord
  • 2testis
  • 2uterus
  • 1adrenal gland
  • 1breast
  • 1bronchus
  • 1lymphatic vessel
  • 1mouth
  • 1nerve
  • 1nose
  • 1ovary
  • 1small intestine
  • 1spleen
  • 1thymus
  • 1thyroid gland
  • 1tongue
  • 1trachea
  • 1ureter
  • 1urinary bladder
  • 1vein
Project
  • 384AMP
  • 1T1D
Genome assembly (visualization)
  • 377hg19
  • 21GRCh38
files.file_type!
  • bigWig
BIOSAMPLE
TYPE

385 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
cell line
EndoC_BH17
Rh-4 cell2
fibroblast of cardiac tissue2
786-O cell1
A-673 cell1
primary cell
endothelial cell of hepatic sinusoid4
glutamatergic neuron4
acute myeloid leukemia cell2
bone marrow cell2
endothelial cell2
tissue
pigmented layer of retina7
retina7
stomach3
heart2
islet of Langerhans2
in vitro differentiated cells
neural progenitor cell10
embryonic stem cell6
chondrocyte5
retinal pigment epithelial cell4
SGBS preadipocytes3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego