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Schema
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
2640
pQTL
1713
candidate regulatory elements
1361
target gene predictions
977
histone modifications
944
chromatin state
925
accessible chromatin
817
binding sites
693
gene expression
198
eQTL
180
differential activity
141
variant allelic effects
84
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Date released
837
February, 2021
832
September, 2022
38
May, 2024
4
October, 2025
2
February, 2024
Available data
1709
bed bed3+
Organism
1713
Homo sapiens
Collection Tags
838
ENCODE
833
EpiMap
26
FNIH_projects-heart
12
FNIH_projects-liver
4
STARNET
Biosample type
941
tissue
366
primary cell
327
cell line
79
in vitro differentiated cells
Organ
159
kidney
147
musculature of body
131
lung
113
intestine
111
brain
109
epithelium
94
limb
89
connective tissue
75
skin of body
72
heart
69
large intestine
59
extraembryonic component
57
embryo
54
vasculature
51
stomach
47
bodily fluid
43
blood
40
blood vessel
37
small intestine
31
ureter
29
placenta
28
adrenal gland
28
mammary gland
28
penis
27
prostate gland
26
liver
25
bone element
24
pancreas
21
lymph node
20
adipose tissue
20
thymus
18
eye
17
esophagus
17
gonad
16
spinal cord
15
spleen
11
artery
9
lymphoid tissue
9
testis
9
uterus
8
mouth
8
ovary
8
thyroid gland
7
lymphatic vessel
6
nerve
6
vein
5
breast
4
bronchus
4
skeleton
4
tongue
4
vagina
3
urinary bladder
2
bone marrow
1
nose
Project
1713
AMP
Genome assembly (visualization)
1709
hg19
42
GRCh38
award.rfa!!
ENCODE3
BIOSAMPLE
TYPE
1713 results
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Clear Filters
candidate regulatory elements
tissue
stomach
40
heart
37
lung
33
muscle of arm
33
brain
29
+ See 118 more…
primary cell
common myeloid progenitor, CD34-positive
27
B cell
17
CD4-positive, alpha-beta memory T cell
14
foreskin keratinocyte
11
natural killer cell
9
+ See 101 more…
cell line
A549
21
MCF-7
9
H9
7
K562
7
HeLa-S3
5
+ See 170 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
neural progenitor cell
5
adipocyte
4
cardiac muscle cell
4
endodermal cell
4
+ See 23 more…
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