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Schema
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1946
target gene predictions
869
chromatin state
727
accessible chromatin
126
eQTL
105
histone modifications
72
Fine-mapped variants
38
candidate regulatory elements
9
gene expression
7
caQTL
6
binding sites
Date released
1661
July, 2026
174
February, 2024
111
November, 2021
Available data
1946
bed bed3+
Organism
1946
Homo sapiens
Collection Tags
1458
ENCODE-rE2G
203
HDMA
174
4DN
111
AMP
111
T2DKP
Biosample type
863
primary cell
664
tissue
375
cell line
44
in vitro differentiated cells
Organ
551
blood
267
brain
114
lung
89
muscle organ
87
kidney
81
heart
79
intestine
78
skin of body
62
uterus
57
large intestine
51
embryo
49
epithelium
33
eye
30
liver
29
adrenal gland
28
bodily fluid
28
extraembryonic component
27
thymus
25
pancreas
25
stomach
24
placenta
23
connective tissue
20
mammary gland
17
spleen
17
thyroid gland
15
bone element
15
gonad
15
small intestine
13
blood vessel
10
ovary
9
prostate gland
9
ureter
6
spinal cord
5
artery
5
esophagus
5
testis
4
adipose tissue
4
skeleton
3
musculature of body
3
urinary bladder
2
breast
2
mouth
2
tongue
2
vagina
1
bronchus
1
embryonic structure
1
gallbladder
1
lymphatic vessel
1
lymphoid tissue
1
vasculature
1
vein
Project
1835
AMP
111
ENCODE
Genome assembly (visualization)
1946
GRCh38
1357
hg19
BIOSAMPLE
TYPE
1946 results
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target gene predictions
primary cell
T-cell
62
stimulated activated CD4-positive, alpha-beta T cell
55
CD4-positive, alpha-beta T cell
50
activated CD4-positive, alpha-beta T cell
29
fibroblast
28
+ See 235 more…
tissue
head of caudate nucleus
86
dorsolateral prefrontal cortex
56
posterior cingulate gyrus
48
placenta
22
stomach
21
+ See 105 more…
cell line
HeLa-S3
55
H1-hESC
37
K562
23
HFFc6
20
HCT116
18
+ See 134 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
12
brain
2
cardiac muscle cell
2
endodermal cell
2
mesothelial cell of epicardium
2
+ See 24 more…
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