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Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 343target gene predictions
  • 193accessible chromatin
  • 111candidate regulatory elements
  • 72chromatin state
  • 48histone modifications
  • 36Fine-mapped variants
  • 29eQTL
  • 19gene expression
  • 18differential activity
  • 18variant allelic effects
  • 16binding sites
Date released
  • 267July, 2026
  • 60September, 2022
  • 11May, 2021
  • 3September, 2023
  • 2March, 2020
Available data
  • 343bed bed3+
Organism
  • 343Homo sapiens
Collection Tags
  • 249ENCODE-rE2G
  • 60EpiMap
  • 18HDMA
  • 13DGA
  • 3AMP
Biosample type
  • 266tissue
  • 35cell line
  • 31primary cell
  • 10in vitro differentiated cells
  • 1stem cell
Organ
  • 578blood
  • 343brain
  • 189lung
  • 162kidney
  • 142intestine
  • 126heart
  • 122epithelium
  • 117skin of body
  • 96large intestine
  • 89muscle organ
  • 84embryo
  • 83connective tissue
  • 80musculature of body
  • 68uterus
  • 64extraembryonic component
  • 62pancreas
  • 57bodily fluid
  • 51stomach
  • 50liver
  • 49limb
  • 46adrenal gland
  • 42eye
  • 41placenta
  • 41thymus
  • 38blood vessel
  • 36mammary gland
  • 36small intestine
  • 31bone element
  • 31vasculature
  • 25gonad
  • 25spleen
  • 24prostate gland
  • 22thyroid gland
  • 22ureter
  • 17adipose tissue
  • 16ovary
  • 15spinal cord
  • 13artery
  • 13esophagus
  • 11penis
  • 10pituitary gland
  • 9lymph node
  • 9testis
  • 7skeleton
  • 6lymphoid tissue
  • 6mouth
  • 6urinary bladder
  • 5breast
  • 5vein
  • 4tongue
  • 4vagina
  • 3bone marrow
  • 3bronchus
  • 3lymphatic vessel
  • 3nerve
  • 1embryonic structure
  • 1gallbladder
  • 1nose
Project
  • 343AMP
Genome assembly (visualization)
  • 267GRCh38
  • 76hg19
BIOSAMPLE
TYPE

343 results

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Clear Filters
target gene predictions
tissue
head of caudate nucleus86
dorsolateral prefrontal cortex57
posterior cingulate gyrus48
brain30
caudate nucleus4
frontal cortex4
Ammon's horn3
cerebellum3
layer of hippocampus3
Brodmann (1909) area 462
angular gyrus2
cerebellar cortex2
cingulate gyrus2
globus pallidus2
inferior parietal cortex2
medulla oblongata2
midbrain2
middle frontal gyrus2
pons2
putamen2
substantia nigra2
temporal lobe2
occipital lobe1
superior temporal gyrus1
cell line
pituitary stalk10
SK-N-SH5
SK-N-DZ4
A1722
BE2C2
Daoy2
M059J2
SK-N-MC2
BE(2)-C1
D341Med1
D721Med1
H41
H541
medulloblastoma1
primary cell
glutamatergic neuron8
brain microvascular endothelial cell3
astrocyte of the cerebellum2
astrocyte of the hippocampus2
choroid plexus epithelial cell2
endothelial cell2
medial ganglionic eminence derived interneuron2
smooth muscle cell2
CGE interneuron1
astrocyte1
astrocyte of the spinal cord1
brain pericyte1
macrophage1
oligodendrocyte precursor cell1
radial glial cell1
smooth muscle cell of the brain vasculature1
in vitro differentiated cells
brain2
ESC dervived hypothalamic neuron (arcuate nucleus)1
ESC dervived hypothalamic progenitor (arcuate nucleus)1
astrocyte1
bipolar neuron1
ecto neural progenitor cell1
glutamatergic neuron1
neural progenitor cell1
neuronal stem cell1
stem cell
undifferentiated ESC (H9 cell line)1
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