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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
4
ATAC-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
31
DNA accessibility
22
Transcription
6
DNA methylation
3D chromatin structure
Date released
267
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
59
October, 2019
59
September, 2020
58
May, 2020
47
September, 2023
40
May, 2024
38
March, 2020
25
February, 2020
19
April, 2020
18
July, 2019
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
4
July, 2018
4
March, 2023
3
March, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
November, 2018
1
October, 2022
1
September, 2018
Available data
bam
559
tsv
551
bigWig
89
txt
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
143
Homo sapiens
Biosample type
93
tissue
45
primary cell
4
in vitro differentiated cells
3
cell line
2
stem cell
Organ
84
bone element
8
kidney
6
epithelium
6
pancreas
4
connective tissue
2
liver
Project
98
AMP
45
HPAP
4
community
Genome assembly (visualization)
5
hg19
Lab
98
AMP-T2D consortium
45
Klaus Kaestner, Upenn
4
Anna Gloyn, Oxford
Audit category:
84
inconsistent ontology term
32
audit script error
assay_slims!
3D chromatin structure
files.file_type!
bam
BIOSAMPLE
ASSAY
147 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
bone element
84
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 1 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
in vitro differentiated cells
adipocyte
4
cell line
EndoC-BH1
1
1
HepG2
1
stem cell
SB Ad3.1
1
1
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