Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
Assay category
DNA accessibility
53
DNA binding
3D chromatin structure
2
Transcription
Target of assay
25
histone
25
histone modification
19
transcription factor
13
narrow histone mark
12
broad histone mark
9
control
2
RNA binding protein
Date released
33
August, 2017
15
December, 2017
5
August, 2021
2
February, 2021
2
May, 2021
2
September, 2017
Available data
2975
bam
2786
bigWig
1586
tsv
1297
bed narrowPeak
1227
fastq
773
bigBed narrowPeak
398
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
59
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
8
csv
3
bedpe bed3+
3
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
59
Homo sapiens
Biosample type
28
tissue
21
in vitro differentiated cells
6
primary cell
3
stem cell
1
cell line
Organ
21
pancreas
14
connective tissue
7
liver
4
adipose tissue
3
embryo
3
epithelium
Project
59
AMP
Genome assembly (visualization)
59
hg19
53
GRCh38
Lab
55
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
assay_slims!
3D chromatin structure
DNA accessibility
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
59 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Capture-C
pCHi-C
total RNA-seq
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
7
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 1 more…
primary cell
hepatocyte
3
CD8-positive, alpha-beta T cell
2
osteoblast
1
stem cell
hESC
3
cell line
HepG2
1
See all biosamples
Download