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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
105
Transcription
DNA accessibility
Target of assay
88
histone
histone modification
44
broad histone mark
44
narrow histone mark
Date released
68
May, 2021
45
May, 2020
10
February, 2023
4
March, 2020
Available data
98
bam
98
bigWig
98
tsv
Organism
127
Homo sapiens
Biosample type
112
primary cell
8
tissue
7
cell line
Organ
9
pancreas
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2635
AMP
224
HPAP
127
T1D
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
123
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
assay_slims!
3D chromatin structure
DNA accessibility
organ_slims!
intestine
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
127 results
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total RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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tissue
islet of Langerhans
7
thymus
1
cell line
EndoC_BH1
2
3
2
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