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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
total RNA-seq
3
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
DNA accessibility
9
Transcription
3D chromatin structure
4
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
24
August, 2017
10
June, 2019
7
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
1
May, 2022
Available data
34
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
fastq
Organism
53
Homo sapiens
Biosample type
40
tissue
13
primary cell
Organ
552
connective tissue
442
adipose tissue
354
pancreas
313
heart
298
liver
228
brain
190
kidney
168
epithelium
167
vasculature
166
blood vessel
147
bone element
92
artery
74
limb
53
musculature of body
40
nerve
29
eye
17
vein
10
embryo
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
34
hg19
20
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
3D chromatin structure
DNA accessibility
files.file_type!
fastq
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
2
1
1
muscle of leg
7
1
psoas muscle
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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