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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
34
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
23
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
Available data
88
bam
79
bigWig
58
tsv
25
bed narrowPeak
21
bigBed narrowPeak
6
tagAlign
Organism
92
Homo sapiens
Biosample type
58
cell line
32
tissue
2
primary cell
Organ
764
pancreas
758
liver
649
connective tissue
483
adipose tissue
393
epithelium
313
heart
231
brain
190
kidney
173
vasculature
169
blood vessel
147
bone element
92
artery
74
limb
60
blood
60
bodily fluid
55
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
17
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
79
GRCh38
79
hg19
Lab
92
AMP-T2D consortium
assay_slims!
3D chromatin structure
DNA accessibility
lab.title!
Stephen Parker, UMich
month_released!
October, 2017
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
23
coronary artery
1
5
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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