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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
178
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
236
DNA accessibility
DNA binding
58
DNA methylation
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
27
July, 2019
27
September, 2018
8
January, 2021
7
August, 2020
6
October, 2019
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
August, 2017
1
November, 2018
Available data
367
bam
362
bigWig
315
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
bigBed narrowPeak
30
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
747
Homo sapiens
Biosample type
1668
tissue
747
primary cell
185
in vitro differentiated cells
171
cell line
6
stem cell
Organ
268
epithelium
251
pancreas
20
connective tissue
11
kidney
8
blood
8
bodily fluid
7
liver
5
heart
4
brain
3
musculature of body
3
vasculature
2
adipose tissue
2
artery
2
blood vessel
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
321
HPAP
306
AMP
120
T1D
Genome assembly (visualization)
327
hg19
279
GRCh38
Lab
321
Klaus Kaestner, Upenn
304
AMP-T2D consortium
122
Kyle Gaulton, UCSD
Audit category:
27
audit script error
26
inconsistent ontology term
assay_slims!
3D chromatin structure
DNA binding
files.file_type!
bigBed narrowPeak
month_released!
January, 2018
BIOSAMPLE
ASSAY
747 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
31
monocyte
54
15
1
1
pancreatic beta cell
21
12
16
16
exocrine cell
39
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