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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
54
total RNA-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
small RNA-seq
Assay category
119
Transcription
82
DNA accessibility
DNA binding
4
DNA methylation
3D chromatin structure
Date released
129
August, 2021
47
September, 2023
14
May, 2023
11
July, 2019
October, 2019
8
February, 2021
3
December, 2019
2
March, 2020
Available data
143
bed narrowPeak
85
bam
85
bigWig
79
bigBed narrowPeak
78
bed bed3+
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
Organism
214
Homo sapiens
Biosample type
203
tissue
7
primary cell
4
cell line
Organ
707
pancreas
518
connective tissue
415
adipose tissue
363
epithelium
228
liver
224
heart
214
kidney
159
bone element
116
vasculature
115
blood vessel
102
artery
33
eye
31
brain
20
lung
18
musculature of body
16
skeleton
15
embryo
10
limb
9
blood
9
bodily fluid
4
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
167
AMP
47
KPMP
Genome assembly (visualization)
81
GRCh38
11
hg19
Lab
141
Katalin Susztak, Upenn
47
KPMP
24
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
assay_slims!
3D chromatin structure
DNA binding
files.file_type!
bed broadPeak
month_released!
October, 2019
BIOSAMPLE
ASSAY
214 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
small RNA-seq
tissue
kidney
75
64
49
6
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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