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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1670
ChIP-seq
925
total RNA-seq
467
ATAC-seq
356
single cell RNA-seq
200
DNase-seq
84
snATAC-seq
44
pCHi-C
15
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA accessibility
Date released
178
June, 2019
10
October, 2019
8
November, 2018
4
August, 2017
Available data
197
bam
197
bed narrowPeak
197
bigBed narrowPeak
197
bigWig
194
bed broadPeak
194
bigBed broadPeak
193
bed bed3+
10
fastq
Organism
200
Homo sapiens
Biosample type
175
tissue
23
primary cell
2
cell line
Organ
80
kidney
35
limb
32
brain
32
musculature of body
29
heart
18
epithelium
18
ureter
10
vasculature
9
blood vessel
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
200
AMP
Genome assembly (visualization)
195
GRCh38
175
hg19
Lab
200
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_slims!
3D chromatin structure
DNA methylation
audit.ERROR.category!
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
200 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
12
+ See 39 more…
primary cell
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 12 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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