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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
199
ATAC-seq
144
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
393
Transcription
287
DNA accessibility
279
DNA binding
DNA methylation
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
July, 2018
April, 2018
41
February, 2021
33
October, 2019
18
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
566
bam
566
bigWig
364
fastq
295
bed narrowPeak
221
tsv
112
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
2
csv
bed bed3
1
tar
Organism
976
Homo sapiens
Biosample type
2712
tissue
976
primary cell
656
cell line
385
in vitro differentiated cells
10
stem cell
Organ
313
epithelium
263
pancreas
34
connective tissue
33
kidney
32
vasculature
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
498
AMP
274
HPAP
204
T1D
Genome assembly (visualization)
565
hg19
491
GRCh38
Lab
463
AMP-T2D consortium
274
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
52
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
DNA methylation
files.file_type!
bed bed3
month_released!
April, 2018
BIOSAMPLE
ASSAY
976 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
35
9
pancreatic beta cell
13
21
23
9
CD8-positive, alpha-beta T cell
33
4
2
1
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