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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
8
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
Transcription
26
DNA binding
13
DNA accessibility
3D chromatin structure
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
5
control
5
transcription factor
1
RNA binding protein
Date released
20
October, 2019
14
February, 2021
3
November, 2017
2
June, 2019
Available data
39
bam
29
bed narrowPeak
24
bigWig
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
4
bed bed3+
3
fastq
1
tar
Organism
39
Homo sapiens
Biosample type
tissue
25
primary cell
14
cell line
Organ
408
liver
302
epithelium
248
pancreas
112
connective tissue
69
blood
69
bodily fluid
45
kidney
45
vasculature
39
blood vessel
23
embryo
23
heart
20
vein
15
brain
14
artery
12
musculature of body
5
eye
1
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
Project
39
AMP
Genome assembly (visualization)
31
hg19
28
GRCh38
Lab
39
AMP-T2D consortium
assay_slims!
3D chromatin structure
Transcription
biosample_type!
tissue
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
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