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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
288
DNA accessibility
270
DNA binding
58
DNA methylation
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
112
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
46
September, 2018
35
February, 2021
31
October, 2019
12
February, 2023
9
July, 2019
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
September, 2020
2
November, 2020
Available data
348
bam
346
bigWig
289
bed narrowPeak
152
fastq
103
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
43
bed broadPeak
43
bigBed broadPeak
31
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
1
bed bed3
1
tar
Organism
633
Homo sapiens
Biosample type
1452
tissue
633
primary cell
252
in vitro differentiated cells
228
cell line
8
stem cell
Organ
230
epithelium
188
pancreas
30
kidney
25
vasculature
23
connective tissue
22
blood vessel
20
vein
12
musculature of body
9
heart
8
blood
8
bodily fluid
8
liver
6
brain
5
eye
1
bone element
1
bone marrow
Project
381
AMP
144
HPAP
108
T1D
Genome assembly (visualization)
356
hg19
277
GRCh38
Lab
348
AMP-T2D consortium
144
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
Audit category:
43
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
Transcription
month_released!
November, 2017
BIOSAMPLE
ASSAY
633 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
pancreatic beta cell
13
23
16
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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