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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
4
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
37
DNA accessibility
Transcription
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
4
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
231
bam
207
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
259
Homo sapiens
Biosample type
244
tissue
15
primary cell
Organ
573
liver
457
pancreas
315
epithelium
259
brain
226
kidney
224
heart
202
connective tissue
164
vasculature
158
blood vessel
111
limb
97
bone element
90
adipose tissue
83
artery
81
musculature of body
69
blood
69
bodily fluid
eye
38
nerve
25
spleen
23
embryo
20
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
259
AMP
Genome assembly (visualization)
205
GRCh38
149
hg19
Lab
259
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
3D chromatin structure
Transcription
lab.title!
Bing Ren, UCSD
organ_slims!
eye
BIOSAMPLE
ASSAY
259 results
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ChIP-seq
DNase-seq
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 73 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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