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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
18
ChIP-seq
6
snATAC-seq
5
STARR-seq
1
whole genome sequencing assay
Assay category
82
DNA accessibility
Transcription
18
DNA binding
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
94
August, 2021
11
May, 2023
1
March, 2019
Available data
78
bed narrowPeak
64
xls
14
bigWig
1
vcf
Organism
106
Homo sapiens
Biosample type
82
tissue
24
cell line
Organ
83
kidney
21
liver
1
pancreas
Project
106
AMP
Genome assembly (visualization)
76
GRCh38
15
hg19
Lab
2405
AMP-T2D consortium
228
Kyle Gaulton, UCSD
144
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
25
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
Transcription
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
106 results
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ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
whole genome sequencing assay
tissue
kidney
75
6
islet of Langerhans
1
cell line
HepG2
18
2
1
HEK293T
2
Synthesized DNA
1
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