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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
44
ATAC-seq
9
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
Transcription
54
DNA accessibility
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
46
October, 2019
35
February, 2023
14
February, 2021
5
June, 2019
July, 2019
3
November, 2017
1
March, 2020
Available data
127
bed narrowPeak
118
bam
87
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
1
tar
1
tsv
Organism
154
Homo sapiens
Biosample type
115
tissue
25
primary cell
14
cell line
Organ
592
liver
456
pancreas
309
epithelium
255
brain
223
kidney
210
heart
201
connective tissue
159
vasculature
154
blood vessel
110
limb
97
bone element
90
adipose tissue
82
artery
79
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
20
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
154
AMP
Genome assembly (visualization)
126
GRCh38
94
hg19
Lab
154
AMP-T2D consortium
assay_slims!
3D chromatin structure
Transcription
month_released!
July, 2019
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
pCHi-C
tissue
coronary artery
5
35
2
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
aorta
13
1
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
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