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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
53
ATAC-seq
43
DNase-seq
3
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
142
DNA binding
97
DNA accessibility
Transcription
3D chromatin structure
3
DNA methylation
Target of assay
101
histone
101
histone modification
65
broad histone mark
36
narrow histone mark
33
control
8
transcription factor
4
RNA binding protein
Date released
85
October, 2019
57
May, 2019
37
June, 2019
35
February, 2023
20
February, 2021
5
July, 2019
3
November, 2017
1
March, 2020
Available data
206
bam
200
bed narrowPeak
156
bigWig
143
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
43
bed bed3+
6
tagAlign
3
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
tar
1
tsv
Organism
243
Homo sapiens
Biosample type
204
tissue
25
primary cell
14
cell line
Organ
594
liver
458
pancreas
315
epithelium
259
brain
228
kidney
224
heart
202
connective tissue
164
vasculature
158
blood vessel
111
limb
97
bone element
90
adipose tissue
83
artery
81
musculature of body
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
20
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
243
AMP
Genome assembly (visualization)
200
GRCh38
167
hg19
Lab
243
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
Transcription
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
2
tibial nerve
35
1
2
tibial artery
23
1
2
muscle of leg
7
13
1
ascending aorta
16
1
+ See 12 more…
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
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