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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
13
single cell RNA-seq
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
1
DNA accessibility
Date released
57
August, 2021
7
May, 2022
5
February, 2021
4
February, 2023
1
October, 2022
Available data
3020
bam
2843
bigWig
1488
bed narrowPeak
1443
tsv
1247
fastq
991
bigBed narrowPeak
395
tagAlign
316
bed broadPeak
281
bigBed broadPeak
260
bed bed3+
95
zippedFastqFolder
74
txt
34
bed bedMethyl
34
bigBed bedMethyl
8
csv
4
tar
1
bedpe bed3+
1
tagAlign bed3+
1
vcf
Organism
73
Homo sapiens
Biosample type
73
tissue
1
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
74
AMP
Genome assembly (visualization)
1
hg19
Lab
57
Katalin Susztak, Upenn
11
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
6
audit script error
assay_slims!
3D chromatin structure
assay_title!
ATAC-seq
audit.ERROR.category!
inconsistent ontology term
month_released!
September, 2020
BIOSAMPLE
ASSAY
74 results
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total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
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cell line
MIN6
1
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