Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
28
ChIP-seq
4
DNase-seq
4
total RNA-seq
2
single cell RNA-seq
Assay category
28
DNA binding
6
Transcription
4
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
February, 2021
25
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
34
bam
27
bigWig
25
bed narrowPeak
25
bigBed narrowPeak
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
38
Homo sapiens
Biosample type
36
tissue
2
primary cell
Organ
750
pancreas
747
liver
357
epithelium
284
heart
279
brain
270
kidney
132
connective tissue
127
vasculature
121
blood vessel
110
limb
98
adipose tissue
89
musculature of body
68
blood
68
bodily fluid
42
nerve
38
artery
33
eye
24
spleen
20
lung
20
vein
18
ureter
8
embryo
5
bone element
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
27
GRCh38
27
hg19
Lab
38
AMP-T2D consortium
assay_slims!
3D chromatin structure
assay_title!
ATAC-seq
biosample_type!
in vitro differentiated cells
month_released!
February, 2021
BIOSAMPLE
ASSAY
38 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
tissue
tibial artery
23
2
1
coronary artery
5
2
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
Download