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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
247
total RNA-seq
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
269
DNA binding
88
DNA accessibility
58
DNA methylation
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
56
September, 2020
54
August, 2017
51
June, 2019
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
31
October, 2019
27
July, 2019
8
January, 2021
6
November, 2017
5
December, 2019
5
November, 2020
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
521
bigWig
515
bam
372
fastq
258
tsv
246
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
77
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
tar
Organism
868
Homo sapiens
Biosample type
2407
tissue
868
primary cell
299
in vitro differentiated cells
268
cell line
10
stem cell
Organ
322
epithelium
272
pancreas
35
connective tissue
34
kidney
31
vasculature
26
blood vessel
20
vein
15
brain
14
musculature of body
12
heart
12
liver
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
392
AMP
272
HPAP
204
T1D
Genome assembly (visualization)
525
hg19
477
GRCh38
Lab
357
AMP-T2D consortium
272
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
39
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
assay_title!
ATAC-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
868 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
12
31
pancreatic beta cell
13
21
12
16
exocrine cell
39
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